WormBase Tree Display for Gene: WBGene00133848

WBGene00133848 SMap: S_parent: Sequence: Cjap.Contig3763
  Identity: Version: 2
    Name: CGC_name: Cjp-nhr-85 From_analysis: Inferred_from_orthology
      Sequence_name: CJA14644
      Molecular_name: CJA14644
        CJA14644.1
        JA55913
      Public_name: Cjp-nhr-85
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:22 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-nhr-85
        2 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000004 5.48042 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 23.271 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 19.891 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        19.909 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        19.9271 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 0.913904 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        0.926449 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        1.21427 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        1.45106 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        1.49409 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        1.53713 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        1.7966 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        1.86147 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        1.90618 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        4.56234 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
      WBls:0000101 1.86147 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        6.38018 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00198306
      00198307
      00198308
      00198309
    Ortholog: WBGene00003675 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00029816 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00067712 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00144647 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00192560 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00223242 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9587 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2235 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13411 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10167 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21105 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14537 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7743 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1753 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11330 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g24543 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8572 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g10231 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00152.g5730 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nhr-85 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13913 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01866.g23594 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_20105 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_003436 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09761 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_10044100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2639 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242085 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288616 Trichuris muris From_analysis: WormBase-Compara
    Paralog (105)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-85. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA14644
    Corresponding_transcript: CJA14644.1
    Other_sequence (14)
  Experimental_info: Expr_pattern: Expr1092170
    Microarray_results: GPL14145_CJA14644_1331-1390_0.826_52_A
      GPL14145_CJA14644_710-769_0.886_14_C
      GPL14145_CJA14644_987-1046_0.654_124_B
  Method: Gene