WormBase Tree Display for Gene: WBGene00136333

WBGene00136333 SMap: S_parent: Sequence: Cjap.Contig18074
  Identity: Version: 2
    Name: CGC_name: Cjp-nhr-43 From_analysis: Inferred_from_orthology
      Sequence_name: CJA17128
      Molecular_name: CJA17128
        CJA17128.1
        JA58339
      Public_name: Cjp-nhr-43
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-nhr-43
        2 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000004 11.24 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 3.44411 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 1.9372 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        2.63511 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        3.33303 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 0.498955 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        1.11275 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        1.43118 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        1.5033 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        1.57951 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        1.59318 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        1.68307 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        1.93221 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        1.93796 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        2.53665 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 1.93221 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        2.50695 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00200325
      00200326
      00200327
      00200328
      00200329
      00200330
    Ortholog: WBGene00003633 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028496 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00066346 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00191556 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00223242 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10828 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g869 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13482 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10975 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7674 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g19549 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10130 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g998 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17815 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g27769 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g3383 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17607 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00189.g6609 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00351.g9606 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_03797.g18384 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nhr-43 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15619 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00015.g971 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00015.g972 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_04899 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014195 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_40232600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11958 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242085 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288616 Trichuris muris From_analysis: WormBase-Compara
    Paralog (106)
    Structured_description: Automated_description: Predicted to enable nuclear receptor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-43. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA17128
    Corresponding_transcript: CJA17128.1
    Other_sequence: RSC00887_1
      Dviv_isotig33556
      RS08978
  Experimental_info: Expr_pattern: Expr1089613
    Microarray_results: GPL14145_CJA17128_545-604_0.767_116_C
      GPL14145_CJA17128_698-757_0.887_26_B
      GPL14145_CJA17128_824-883_0.931_8_A
  Method: Gene