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WormBase Tree Display for Gene: WBGene00242557

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Name Class

WBGene00242557SMapS_parentSequenceOVOC_OM2_79
IdentityVersion2
Name (3)
SpeciesOnchocerca volvulus
HistoryVersion_change129 Nov 2013 15:05:33WBPerson3111EventImportedMAKER import
228 May 2014 09:51:36WBPerson2062EventAcquires_mergeWBGene00242559
Acquires_mergeWBGene00242559
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000010114.8188From_analysisRNASeq.ovolvulus.total_over_all_stages.control_mean
7.5671From_analysisRNASeq.ovolvulus.total_over_all_stages.control_median
WBls:0000104 (16)
WBls:000010736.6029From_analysisRNASeq.ovolvulus.WBls:0000107.control_mean
RNASeq.ovolvulus.WBls:0000107.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010811.7754From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
22.5695From_analysisRNASeq.ovolvulus.WBls:0000108.control_mean
25.8442From_analysisRNASeq.ovolvulus.WBls:0000108.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
30.0888From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:000066433.0419From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
35.7881From_analysisRNASeq.ovolvulus.WBls:0000664.control_mean
RNASeq.ovolvulus.WBls:0000664.control_median
38.5343From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
GO_annotation00256442
00256443
OrthologWBGene00152874Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00156518Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00158857Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00030474Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035094Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224085Brugia malayiFrom_analysisWormBase-Compara
WBGene00006371Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006374Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00124669Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137450Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g10728Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g3491Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5697Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18225Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g19048Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10531Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g3935Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2504Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4120Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9058Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g120Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g3549Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1047Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g10890Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g21633Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g2312Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g23567Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17670Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g4666Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00116.g4804Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00238.g7633Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-syx-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cni-syx-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold527.g3086Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold574.g4356Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00012.g793Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00271.g8403Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00524Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_09195Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001522Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_024411Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11360Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9471Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10038000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0240510Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00051691Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00060825Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00090764Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105441Pristionchus pacificusFrom_analysisWormBase-Compara
chrIV_pilon.g11082Caenorhabditis elegansFrom_analysisWormBase-Compara
chrX_pilon.g19061Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00266396Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00239064Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244303Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244919Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00246007Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248685Onchocerca volvulusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-3 and syx-4. In C. elegans, syx-3 is involved in positive regulation of defecation and regulation of muscle contraction.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSOVOC5748
Corresponding_CDS_historyOVOC5748:ov243
Corresponding_transcriptOVOC5748.1
MethodGene