WormBase Tree Display for Gene: WBGene00006374
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| WBGene00006374 | Evidence | Paper_evidence | WBPaper00003608 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T01B11 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | syx-4 | Person_evidence | WBPerson3132 | |||||
| WBPerson203 | |||||||||
| Sequence_name | T01B11.3 | ||||||||
| Molecular_name | T01B11.3 | ||||||||
| T01B11.3.1 | |||||||||
| CE43759 | |||||||||
| Other_name | syn-4 | Person_evidence | WBPerson203 | ||||||
| CELE_T01B11.3 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | syx-4 | ||||||||
| DB_info | Database | AceView | gene | 4J223 | |||||
| WormQTL | gene | WBGene00006374 | |||||||
| WormFlux | gene | WBGene00006374 | |||||||
| NDB | locus_tag | CELE_T01B11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006374|UniProtKB=P91409 | |||||||
| family | PTHR19957 | ||||||||
| NCBI | gene | 177647 | |||||||
| RefSeq | protein | NM_069038.4 | |||||||
| SwissProt | UniProtAcc | P91409 | |||||||
| UniProt_GCRP | UniProtAcc | P91409 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | syx-4 | ||||
| Other_name | syn-4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syx | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00035562 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00006371 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006372 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006373 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006798 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009478 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012150 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | syx-4 encodes a syntaxin-related t-SNARE; t-SNARES function as receptor for intracellular transport vesicles during membrane fusion reactions and in C. elegans, SYX-4 activity is essential for three aspects of early embryogenesis: polar body extrusion, cytokinesis, and nuclear envelope reassembly following mitosis; in addition, SYX-4 plays a role in formation of the vitelline membrane and/or eggshell, as SYX-4 is required for regulated secretion of CAV-1-containing cortical granules following fertilization; SYX-4 is expressed in cortical granules, the outer membrane of the early embryo, in a punctate pattern around reforming nuclear envelopes, and at the cleavage furrow during ingression; in L1 larvae, SYX-4 is expressed at high levels in lateral seam cells, and in adult hermaphrodites SYX-4 localizes to the incomplete membranes that separate germline nuclei in the gonad. | Paper_evidence | WBPaper00003608 | |||||
| WBPaper00032152 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Feb 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in cortical granule exocytosis; positive regulation of cytokinesis; and regulation of exocytosis. Located in cleavage furrow; cortical granule; and perinuclear region of cytoplasm. Expressed in gonad and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T01B11.3 | |||||||
| Corresponding_CDS_history | T01B11.3:wp203 | ||||||||
| Corresponding_transcript | T01B11.3.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf228680 | ||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr2735 | ||||||||
| Expr8957 | |||||||||
| Expr1019951 | |||||||||
| Expr1032572 | |||||||||
| Expr1155703 | |||||||||
| Expr2017194 | |||||||||
| Expr2035330 | |||||||||
| Drives_construct | WBCnstr00005708 | ||||||||
| WBCnstr00005929 | |||||||||
| WBCnstr00009555 | |||||||||
| WBCnstr00037915 | |||||||||
| Construct_product | WBCnstr00005708 | ||||||||
| WBCnstr00005929 | |||||||||
| WBCnstr00008648 | |||||||||
| WBCnstr00009555 | |||||||||
| WBCnstr00010925 | |||||||||
| WBCnstr00037915 | |||||||||
| Antibody | WBAntibody00000234 | ||||||||
| WBAntibody00001736 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (128) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | IV | Position | 3.81268 | Error | 0.006521 | |||
| Positive | Positive_clone | T01B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5430 | |||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
