WormBase Tree Display for Gene: WBGene00131539

WBGene00131539 SMap: S_parent: Sequence: Cjap.Contig17065
  Identity: Version: 3
    Name (4)
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:22 WBPerson4055 Event: Imported: NGASP import
        2 27 Jan 2009 12:59:25 WBPerson4055 Name_change: CGC_name: Cjp-vha-6
        3 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vha
    RNASeq_FPKM: WBls:0000004 66.4935 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 176.865 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 297.345 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        301.587 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        305.83 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 58.2464 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        67.6312 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        69.6256 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        72.7512 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        73.8785 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        75.0059 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        76.3045 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        83.0861 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        90.1988 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        93.8908 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
      WBls:0000101 112.075 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        75.0059 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00196475
      00196476
      00196477
      00196478
    Ortholog (32)
    Paralog: WBGene00132495 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00136401 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00120256 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00133130 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00180595 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00212986 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V0 domain. Is an ortholog of C. elegans vha-6. In C. elegans, vha-6 is involved in nematode larval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA12335
    Corresponding_transcript: CJA12335.1
    Other_sequence: EX008139.1
      BXC03374_1
      FN601335.1
      Oden_isotig12989
      AS05322
      FD513973.1
      EX558568.1
      PPC02052_1
      Tcir_isotig07492
      ACC04350_1
      Tcir_isotig29012
      SR02674
      FG973358.1
      Name_isotig03156
      FC543463.1
      MH09920
      EX012282.1
      FC541220.1
      PTC01014_1
      CJC00902_1
      EX008515.1
      JO472469.1
      NAC00347_1
      SRC01652_1
      Tcir_isotig16492
      HBC21651_1
      FC543579.1
      Tcol_isotig13075
      FC543557.1
      Acan_isotig18969
      EY465731.1
      BG467540.1
      ASC01106_1
      Hbac_isotig03389
      FC810282.1
      MHC07739_1
      Hbac_isotig06054
      JI171090.1
      EY469248.1
      CJC05488_1
      PPC17889_1
      SRC01750_1
      ACC12501_1
      FC815931.1
      ACC15048_1
      Dviv_isotig26420
      FC815666.1
      Acan_isotig07945
      BMC07979_1
      HC00751
      GT571331.1
      PPC13084_1
      HCC04093_1
      FC546333.1
      Tcol_isotig26198
      CBC03657_1
      FC810508.1
      HBC14954_1
      FC541171.1
      JO472504.1
      Name_isotig06322
      CSC00688_1
      Oden_isotig26768
      Oden_isotig12990
      AS01642
      PP02479
      FC540466.1
  Experimental_info: Expr_pattern: Expr1074512
    Microarray_results: GPL14145_CJA12335_1596-1655_0.448_360_C
      GPL14145_CJA12335_1715-1774_0.601_227_B
      GPL14145_CJA12335_1979-2038_0.462_334_A
  Method: Gene