WormBase Tree Display for Gene: WBGene00014046
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| WBGene00014046 | SMap | S_parent | Sequence | ZK666 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-60 | Person_evidence | WBPerson261 | |||||
| WBPerson655 | |||||||||
| Sequence_name | ZK666.6 | ||||||||
| Molecular_name | ZK666.6 | ||||||||
| ZK666.6.1 | |||||||||
| CE02391 | |||||||||
| Other_name | CELE_ZK666.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | clec-60 | ||||||||
| DB_info | Database | AceView | gene | 2K770 | |||||
| WormQTL | gene | WBGene00014046 | |||||||
| WormFlux | gene | WBGene00014046 | |||||||
| NDB | locus_tag | CELE_ZK666.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00014046|UniProtKB=Q23564 | |||||||
| family | PTHR31024 | ||||||||
| NCBI | gene | 191384 | |||||||
| RefSeq | protein | NM_063858.4 | |||||||
| TREEFAM | TREEFAM_ID | TF317104 | |||||||
| TrEMBL | UniProtAcc | Q23564 | |||||||
| UniProt_GCRP | UniProtAcc | Q23564 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2005 17:40:12 | WBPerson2970 | Name_change | CGC_name | clec-60 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00004708 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00078945 | ||||||||
| Ortholog (60) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | clec-60 encodes a C-type lectin protein with no obvious non-nematode orthologs; clec-60 appears to play a role in the innate immune respone to some bacterial pathogens, including Microbacterium nematophilum and Salmonella enterica; clec-60 transcription is induced 6.6-fold by infection with M. nematophilum, making it one of the most strongly infection-responsive genes (second only to tts-1); CLEC-60 is expressed throughout the larval intestine, with expression continuing in the adult adult primarily in the posterior intestinal cells int8 and int9; CLEC-60 contains an N-terminal von Willebrand factor type A domain and a C-terminal C-type lectin domain. | Paper_evidence | WBPaper00027722 | |||||
| WBPaper00044718 | |||||||||
| Person_evidence | WBPerson426 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 19 Feb 2014 00:00:00 | ||||||||
| Automated_description | Involved in defense response to Gram-positive bacterium. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK666.6 | |||||||
| Corresponding_transcript | ZK666.6.1 | ||||||||
| Other_sequence (5) | |||||||||
| Associated_feature | WBsf989355 | ||||||||
| WBsf223790 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00078250 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110396 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076894 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110394 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022114 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106798 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038403 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110395 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082508 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059632 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3949 | ||||||||
| Expr12635 | |||||||||
| Expr1025412 | |||||||||
| Expr1163042 | |||||||||
| Expr2010193 | |||||||||
| Drives_construct | WBCnstr00011773 | ||||||||
| WBCnstr00015098 | |||||||||
| WBCnstr00022342 | |||||||||
| WBCnstr00029353 | |||||||||
| Construct_product | WBCnstr00029353 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (316) | |||||||||
| Interaction (81) | |||||||||
| WBProcess | WBbiopr:00000008 | ||||||||
| WBbiopr:00000039 | |||||||||
| Map_info | Map | II | Position | 2.80209 | Error | 0.031689 | |||
| Positive | Positive_clone | ZK666 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027722 | ||||||||
| WBPaper00031238 | |||||||||
| WBPaper00031686 | |||||||||
| WBPaper00032331 | |||||||||
| WBPaper00032424 | |||||||||
| WBPaper00033987 | |||||||||
| WBPaper00036876 | |||||||||
| WBPaper00037524 | |||||||||
| WBPaper00038100 | |||||||||
| WBPaper00038223 | |||||||||
| WBPaper00038503 | |||||||||
| WBPaper00040118 | |||||||||
| WBPaper00040174 | |||||||||
| WBPaper00041339 | |||||||||
| WBPaper00041525 | |||||||||
| WBPaper00043247 | |||||||||
| WBPaper00044718 | |||||||||
| WBPaper00045045 | |||||||||
| WBPaper00046040 | |||||||||
| WBPaper00050932 | |||||||||
| WBPaper00053254 | |||||||||
| WBPaper00055546 | |||||||||
| WBPaper00056416 | |||||||||
| WBPaper00059843 | |||||||||
| WBPaper00060200 | |||||||||
| WBPaper00061436 | |||||||||
| WBPaper00061669 | |||||||||
| WBPaper00061774 | |||||||||
| WBPaper00064255 | |||||||||
| WBPaper00064639 | |||||||||
| WBPaper00064781 | |||||||||
| WBPaper00065850 | |||||||||
| WBPaper00065988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
