WormBase Tree Display for Gene: WBGene00000884
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| WBGene00000884 | SMap | S_parent | Sequence | D1009 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-8 | Person_evidence | WBPerson466 | |||||
| Sequence_name | D1009.2 | ||||||||
| Molecular_name | D1009.2 | ||||||||
| D1009.2.1 | |||||||||
| CE27892 | |||||||||
| D1009.2.2 | |||||||||
| Other_name | cyp-8 | Person_evidence | WBPerson466 | ||||||
| CELE_D1009.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | cyn-8 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-8 -> cyn-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (64) | |||||||||
| Legacy_information | [C.elegansII] NMK. Cyclophilin family (diverged CsA-binding domain). Cosmid D1009. [TP] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (39) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-8 encodes a peptidyl-propyl cis-trans isomerase of the cyclophilin family; cyclophilins are implicated in protein folding, however the precise role of cyn-8 is not known; a CYN-8-fusion protein localises specifically to gut cell nuclei. | Paper_evidence | WBPaper00002472 | |||||
| WBPaper00003528 | |||||||||
| WBPaper00005482 | |||||||||
| WBPaper00026884 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Enables peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Located in nucleus. Is an ortholog of human PPIG (peptidylprolyl isomerase G). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D1009.2 | |||||||
| Corresponding_CDS_history | D1009.2a:wp271 | ||||||||
| Corresponding_transcript | D1009.2.1 | ||||||||
| D1009.2.2 | |||||||||
| Other_sequence | U70827.1 | ||||||||
| Acan_isotig13860 | |||||||||
| Tcol_isotig12294 | |||||||||
| CBC00531_1 | |||||||||
| Tcol_isotig12295 | |||||||||
| BMC01029_1 | |||||||||
| MI07350 | |||||||||
| CBC11764_1 | |||||||||
| MIC06813_1 | |||||||||
| Associated_feature | WBsf648385 | ||||||||
| WBsf663063 | |||||||||
| WBsf1006275 | |||||||||
| WBsf236096 | |||||||||
| WBsf236097 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076253 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043336 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012491 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007605 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030315 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr744 | ||||||||
| Expr745 | |||||||||
| Expr1020231 | |||||||||
| Expr1030549 | |||||||||
| Expr1147316 | |||||||||
| Expr2010676 | |||||||||
| Expr2028916 | |||||||||
| Drives_construct | WBCnstr00012583 | ||||||||
| WBCnstr00037222 | |||||||||
| Construct_product | WBCnstr00037222 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (161) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | X | Position | 0.443497 | Error | 0.002321 | |||
| Positive | Positive_clone | D1009 | Author_evidence | Page AM | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4250 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002472 | ||||||||
| WBPaper00005232 | |||||||||
| WBPaper00026884 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Cyclophilin family (diverged CsA-binding domain). | ||||||||
| [Page AM]-Identified by the sequencing project. Has cyclophilin homology by Blast analysis. cDNA clone isolated | |||||||||
| PPIase or cyclophilin, EC 5.2.1.8 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| This gene has been renamed with approval of the CGC (cyp-8->cyn-8) | Person_evidence | WBPerson466 | |||||||
| Method | Gene |
