WormBase Tree Display for Gene: WBGene00001623
expand all nodes | collapse all nodes | view schema
| WBGene00001623 | Evidence | Person_evidence | WBPerson402 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson145 | |||||||||
| SMap | S_parent | Sequence | Y53C12A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | glt-5 | |||||||
| Sequence_name | Y53C12A.2 | ||||||||
| Molecular_name | Y53C12A.2 | ||||||||
| Y53C12A.2.1 | |||||||||
| CE14886 | |||||||||
| Other_name | CELE_Y53C12A.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | glt-5 | ||||||||
| DB_info | Database | AceView | gene | 2J998 | |||||
| WormQTL | gene | WBGene00001623 | |||||||
| WormFlux | gene | WBGene00001623 | |||||||
| NDB | locus_tag | CELE_Y53C12A.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001623|UniProtKB=O18210 | |||||||
| family | PTHR11958 | ||||||||
| NCBI | gene | 174530 | |||||||
| RefSeq | protein | NM_063693.5 | |||||||
| TrEMBL | UniProtAcc | O18210 | |||||||
| UniProt_GCRP | UniProtAcc | O18210 | |||||||
| OMIM | gene | 600300 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glt | ||||||||
| Allele (32) | |||||||||
| Strain | WBStrain00032309 | ||||||||
| WBStrain00040788 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00001620 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001621 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001622 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001624 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001625 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | glt-5 encodes an ortholog of glutamate/aspartate and neutral amino acid transporters. | Paper_evidence | WBPaper00004424 | |||||
| WBPaper00013304 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-glutamate transmembrane transporter activity; glutamate:sodium symporter activity; and neutral L-amino acid transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport. Predicted to be located in plasma membrane. Expressed in pharynx. Human ortholog(s) of this gene implicated in Huntington's disease; amyotrophic lateral sclerosis; and developmental and epileptic encephalopathy 41. Is an ortholog of human SLC1A2 (solute carrier family 1 member 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||
| DOID:12858 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||||
| DOID:0080442 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10940) | ||||||
| Molecular_info | Corresponding_CDS | Y53C12A.2 | |||||||
| Corresponding_transcript | Y53C12A.2.1 | ||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf223695 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057251 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020910 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037402 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4790 | ||||||||
| Expr1015660 | |||||||||
| Expr1160686 | |||||||||
| Expr2012129 | |||||||||
| Expr2030365 | |||||||||
| Drives_construct | WBCnstr00012247 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (57) | |||||||||
| Map_info | Map | II | Position | 1.66352 | Error | 0.002512 | |||
| Positive | Positive_clone | Y53C12A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030901 | ||||||||
| WBPaper00032397 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00052492 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064809 | |||||||||
| WBPaper00065331 | |||||||||
| WBPaper00065993 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
