WormBase Tree Display for Gene: WBGene00002151
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| WBGene00002151 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | irk-3 | Person_evidence | WBPerson655 | |||||
| Sequence_name | K04G11.5 | ||||||||
| Molecular_name (20) | |||||||||
| Other_name | CELE_K04G11.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | irk-3 | ||||||||
| DB_info | Database | AceView | gene | XO970 | |||||
| WormQTL | gene | WBGene00002151 | |||||||
| WormFlux | gene | WBGene00002151 | |||||||
| NDB | locus_tag | CELE_K04G11.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002151|UniProtKB=A0A1C3NSK2 | |||||||
| family | PTHR11767 | ||||||||
| NCBI | gene | 191696 | |||||||
| RefSeq | protein | NM_001330918.4 | |||||||
| NM_001330920.4 | |||||||||
| NM_001330921.5 | |||||||||
| NM_001392886.1 | |||||||||
| NM_001381146.1 | |||||||||
| NM_001330922.4 | |||||||||
| TrEMBL | UniProtAcc | A0A1C3NSP8 | |||||||
| Q93849 | |||||||||
| A0A1C3NSR4 | |||||||||
| A0A1C3NSS7 | |||||||||
| A0A1C3NSL2 | |||||||||
| A0A1C3NSK2 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A1C3NSK2 | |||||||
| OMIM | gene | 600359 | |||||||
| 602208 | |||||||||
| 603208 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irk | ||||||||
| Allele (279) | |||||||||
| Legacy_information | [Thomas JH] irk for Inward Rectifying potassium (K) channel family. Predicted gene K04G11.5 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (56) | |||||||||
| Paralog | WBGene00002149 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002150 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable inward rectifier potassium channel activity. Involved in short-term memory. Predicted to be located in plasma membrane. Predicted to be part of monoatomic ion channel complex. Expressed in HSNL; HSNR; and sensory neurons. Human ortholog(s) of this gene implicated in several diseases, including Bartter disease type 2; EAST syndrome; and Leber congenital amaurosis 16. Is an ortholog of human KCNJ10 (potassium inwardly rectifying channel subfamily J member 10); KCNJ13 (potassium inwardly rectifying channel subfamily J member 13); and KCNJ15 (potassium inwardly rectifying channel subfamily J member 15). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110498 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6256) | ||||
| DOID:0060484 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6256) | ||||||
| DOID:0110143 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6255) | ||||||
| DOID:0111570 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6259) | ||||||
| DOID:0110118 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6259) | ||||||
| Molecular_info | Corresponding_CDS | K04G11.5a | |||||||
| K04G11.5b | |||||||||
| K04G11.5c | |||||||||
| K04G11.5d | |||||||||
| K04G11.5e | |||||||||
| K04G11.5f | |||||||||
| Corresponding_CDS_history | K04G11.5:wp83 | ||||||||
| K04G11.5:wp109 | |||||||||
| Corresponding_transcript | K04G11.5a.1 | ||||||||
| K04G11.5a.2 | |||||||||
| K04G11.5a.3 | |||||||||
| K04G11.5b.1 | |||||||||
| K04G11.5c.1 | |||||||||
| K04G11.5d.1 | |||||||||
| K04G11.5e.1 | |||||||||
| K04G11.5f.1 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf1007890 | ||||||||
| WBsf1007891 | |||||||||
| WBsf1007892 | |||||||||
| WBsf1007893 | |||||||||
| WBsf1024388 | |||||||||
| WBsf1024389 | |||||||||
| WBsf1024390 | |||||||||
| WBsf238234 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049930 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033962 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016608 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16179 | ||||||||
| Expr1016162 | |||||||||
| Expr1153635 | |||||||||
| Expr2012825 | |||||||||
| Expr2031063 | |||||||||
| Drives_construct | WBCnstr00036414 | ||||||||
| WBCnstr00042794 | |||||||||
| Construct_product | WBCnstr00036414 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction | WBInteraction000214990 | ||||||||
| Map_info | Map | X | Position | 16.6969 | |||||
| Positive | Positive_clone | K04G11 | Person_evidence | WBPerson654 | |||||
| WBPerson655 | |||||||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034195 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048988 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064330 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
