WormBase Tree Display for Gene: WBGene00003280
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WBGene00003280 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPaper00004927 | |||||||||
SMap | S_parent | Sequence | Y37A1B | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-52 | Person_evidence | WBPerson18 | |||||
Sequence_name | Y37A1B.16 | ||||||||
Molecular_name | Y37A1B.16 | ||||||||
Y37A1B.16a | |||||||||
Y37A1B.16b | |||||||||
Other_name | cel-mir-52 | Remark | miRBase V21 import | ||||||
Cel-Mir-52-P1 | Remark | MirGeneDB 2.1 import | |||||||
CELE_Y37A1B.16 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | mir-52 | ||||||||
DB_info | Database | miRBase | acc | MI0000023 | |||||
SignaLink | mirna | cel-mir-52 | |||||||
MirGeneDB | cel | Cel-Mir-52-P1 | |||||||
NDB | locus_tag | CELE_Y37A1B.16 | |||||||
NCBI | gene | 260223 | |||||||
RefSeq | protein | NR_000450.2 | |||||||
RNAcentral | URSid | URS00003074BE | |||||||
URS0000487FD2 | |||||||||
URS00004ABB6B | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele (12) | |||||||||
Strain | WBStrain00027407 | ||||||||
WBStrain00027417 | |||||||||
WBStrain00027572 | |||||||||
WBStrain00027578 | |||||||||
WBStrain00050744 | |||||||||
In_cluster | MIR-52 | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-52 encodes a microRNA (miRNA), a small noncoding RNA that is likely involved in posttranscriptional regulation of gene expression; miR-52 is expressed at highest levels in L1 larvae, but is also detected at all other stages of development and in him-8 mutant animals and dauer and starved L1 larvae; biochemical studies indicate that miR-52 appears to be associated with distinct ribonucleoprotein complexes at different stages of development. | Paper_evidence | WBPaper00004928 | |||||
WBPaper00006077 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Expressed in several structures, including arcade cell; coelomocyte; gonad; hypodermis; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | Y37A1B.16 | |||||||
Y37A1B.16a | |||||||||
Y37A1B.16b | |||||||||
Other_sequence | AJ487576 | ||||||||
Associated_feature | WBsf979117 | ||||||||
WBsf998494 | |||||||||
WBsf998495 | |||||||||
WBsf1018591 | |||||||||
WBsf1018592 | |||||||||
Experimental_info | Expr_pattern (5) | ||||||||
Drives_construct | WBCnstr00005515 | ||||||||
WBCnstr00006124 | |||||||||
WBCnstr00006155 | |||||||||
WBCnstr00013854 | |||||||||
WBCnstr00016906 | |||||||||
Construct_product | WBCnstr00006155 | ||||||||
WBCnstr00006512 | |||||||||
WBCnstr00006513 | |||||||||
WBCnstr00006514 | |||||||||
Expression_cluster (26) | |||||||||
Interaction (14) | |||||||||
Map_info | Map | IV | Position | 11.1729 | Error | 0.004674 | |||
Positive | Positive_clone | Y37A1B | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (19) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |