WormBase Tree Display for Gene: WBGene00003286
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WBGene00003286 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y67D8A | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | mir-58.1 | Person_evidence | WBPerson18 | |||||
Sequence_name | Y67D8A.4 | ||||||||
Molecular_name | Y67D8A.4 | ||||||||
Y67D8A.4a | |||||||||
Y67D8A.4b | |||||||||
Other_name | cel-mir-58a | Remark | miRBase V21 import | ||||||
mir-58a | Remark | miRBase V21 import | |||||||
mir-58 | Remark | Other_name changed August 2014 | |||||||
Cel-Bantam-P1 | Remark | MirGeneDB 2.1 import | |||||||
CELE_Y67D8A.4 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | mir-58.1 | ||||||||
DB_info | Database | miRBase | acc | MI0000029 | |||||
SignaLink | mirna | cel-mir-58 | |||||||
MirGeneDB | cel | Cel-Bantam-P1 | |||||||
NDB | locus_tag | CELE_Y67D8A.4 | |||||||
NCBI | gene | 260181 | |||||||
RefSeq | protein | NR_000454.2 | |||||||
RNAcentral | URSid | URS0000123C51 | |||||||
URS00004DE969 | |||||||||
URS0000766CCC | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 01 Aug 2014 15:54:20 | WBPerson1983 | Name_change | CGC_name | mir-58.1 | ||||
Other_name | mir-58 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele | WBVar02151441 | ||||||||
WBVar00090890 | |||||||||
WBVar02151678 | |||||||||
WBVar02151687 | |||||||||
WBVar01498316 | |||||||||
WBVar01499789 | |||||||||
WBVar01499633 | |||||||||
WBVar00897401 | |||||||||
WBVar00897402 | |||||||||
Strain | WBStrain00027508 | ||||||||
WBStrain00027525 | |||||||||
WBStrain00027592 | |||||||||
WBStrain00027593 | |||||||||
WBStrain00007202 | |||||||||
WBStrain00007203 | |||||||||
WBStrain00007204 | |||||||||
WBStrain00007205 | |||||||||
WBStrain00007209 | |||||||||
In_cluster | BANTAM | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-58.1 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-58.1 is expressed constitutively throughout development in normal worms and in glp-4(bn2) adults; many of the known microRNAs are involved in post-transcriptional regulation of genes. | Paper_evidence | WBPaper00004927 | |||||
WBPaper00004928 | |||||||||
WBPaper00005825 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 20 Jan 2005 00:00:00 | ||||||||
Automated_description | Expressed in several structures, including excretory cell; hypodermis; intestine; pharynx; and spermatheca. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | Y67D8A.4 | |||||||
Y67D8A.4a | |||||||||
Y67D8A.4b | |||||||||
Gene_product_binds | WBsf977969 | ||||||||
WBsf977970 | |||||||||
WBsf977971 | |||||||||
WBsf977972 | |||||||||
Experimental_info | Expr_pattern | Expr2488 | |||||||
Expr8461 | |||||||||
Expr10927 | |||||||||
Expr12847 | |||||||||
Expr12855 | |||||||||
Drives_construct | WBCnstr00013307 | ||||||||
WBCnstr00022898 | |||||||||
WBCnstr00022906 | |||||||||
Regulate_expr_cluster | WBPaper00064080:miR-58_miRNA_interacting | ||||||||
Expression_cluster (25) | |||||||||
Interaction (14) | |||||||||
Map_info | Map | IV | Position | -5.44068 | Error | 0.089176 | |||
Positive | Positive_clone | Y67D8A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (23) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |