WormBase Tree Display for Gene: WBGene00003380
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| WBGene00003380 | SMap | S_parent | Sequence | C10A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mnm-2 | Paper_evidence | WBPaper00031067 | |||||
| Person_evidence | WBPerson488 | ||||||||
| Sequence_name | C10A4.8 | ||||||||
| Molecular_name | C10A4.8 | ||||||||
| C10A4.8.1 | |||||||||
| CE35391 | |||||||||
| Other_name | CELE_C10A4.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | mnm-2 | ||||||||
| DB_info | Database | AceView | gene | XI30 | |||||
| WormQTL | gene | WBGene00003380 | |||||||
| WormFlux | gene | WBGene00003380 | |||||||
| NDB | locus_tag | CELE_C10A4.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003380|UniProtKB=Q17895 | |||||||
| family | PTHR24390 | ||||||||
| NCBI | gene | 182489 | |||||||
| RefSeq | protein | NM_076855.5 | |||||||
| SwissProt | UniProtAcc | Q17895 | |||||||
| TREEFAM | TREEFAM_ID | TF321755 | |||||||
| UniProt_GCRP | UniProtAcc | Q17895 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Acquires_merge | WBGene00015669 | ||
| Imported | Initial conversion from geneace | ||||||||
| 2 | 22 Oct 2007 11:44:53 | WBPerson2970 | Name_change | Sequence_name | C10A4.8 | ||||
| Acquires_merge | WBGene00015669 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mnm | ||||||||
| Allele (44) | |||||||||
| Strain | WBStrain00031156 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00059574 | ||||||||
| 00059575 | |||||||||
| 00059576 | |||||||||
| 00059577 | |||||||||
| 00059578 | |||||||||
| 00059579 | |||||||||
| 00059580 | |||||||||
| 00059581 | |||||||||
| 00059582 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00010770 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00011661 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013240 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013970 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022592 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of axon guidance. Located in nucleus. Expressed in several structures, including intestine; neurons; rectum; spermathecal-uterine junction; and vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C10A4.8 | |||||||
| Corresponding_transcript | C10A4.8.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf670722 | ||||||||
| WBsf978800 | |||||||||
| WBsf1005829 | |||||||||
| WBsf1005830 | |||||||||
| WBsf1023242 | |||||||||
| WBsf237574 | |||||||||
| WBsf237575 | |||||||||
| Transcription_factor | WBTranscriptionFactor000956 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00010579 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076108 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028766 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00068825 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040280 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4888 | ||||||||
| Expr4889 | |||||||||
| Expr7429 | |||||||||
| Expr10367 | |||||||||
| Expr10368 | |||||||||
| Expr1022368 | |||||||||
| Expr1031557 | |||||||||
| Expr1144351 | |||||||||
| Expr2013631 | |||||||||
| Expr2031865 | |||||||||
| Drives_construct | WBCnstr00012313 | ||||||||
| WBCnstr00012314 | |||||||||
| WBCnstr00012572 | |||||||||
| WBCnstr00015282 | |||||||||
| Construct_product | WBCnstr00012313 | ||||||||
| WBCnstr00012314 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | X | Position | -1.74946 | Error | 0.003679 | |||
| Positive | Positive_clone | C10A4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4784 | |||||||
| 4794 | |||||||||
| 4795 | |||||||||
| Pos_neg_data | 10773 | ||||||||
| 10774 | |||||||||
| Reference | WBPaper00006025 | ||||||||
| WBPaper00024818 | |||||||||
| WBPaper00024820 | |||||||||
| WBPaper00031067 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
