WormBase Tree Display for Gene: WBGene00003994
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| WBGene00003994 | SMap | S_parent | Sequence | C18G1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pgl-3 | Person_evidence | WBPerson632 | |||||
| Sequence_name | C18G1.4 | ||||||||
| Molecular_name | C18G1.4a | ||||||||
| C18G1.4a.1 | |||||||||
| CE17420 | |||||||||
| C18G1.4b | |||||||||
| CE27717 | |||||||||
| C18G1.4b.1 | |||||||||
| Other_name | tag-136 | Person_evidence | WBPerson201 | ||||||
| CELE_C18G1.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | pgl-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 06 Sep 2005 09:22:32 | WBPerson2970 | Event | Acquires_merge | WBGene00015983 | ||||
| 3 | 06 Oct 2005 10:24:08 | WBPerson2970 | Event | Acquires_merge | WBGene00006482 | ||||
| Name_change | Other_name | tag-136 | |||||||
| Acquires_merge | WBGene00015983 | ||||||||
| WBGene00006482 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgl | ||||||||
| Allele (52) | |||||||||
| Strain (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00003992 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003993 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pgl-3 encodes a novel protein that is a member of the PGL (P Granule Abnormality) family of C. elegans proteins that are associated with germline P granules; pgl-3 functions redundantly with pgl-1 in hermaphrodite germline development by controlling the extent of germline proliferation as well as gametogenesis and embryonic development; PGL-3 and PGL-1 interact in vitro and in vivo, suggesting that they function are part of the same complex; PGL-3 also interacts with PGL-2 in vitro; PGL-3 localizes to P granules in both sexes at all stages of development except during spermatogenesis; PGL-3 localization to P granules requires the GLH-1 germline helicase, a constitutive P granule component. | Paper_evidence | WBPaper00024251 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Mar 2008 00:00:00 | ||||||||
| Automated_description | Enables RNA endonuclease activity and identical protein binding activity. Located in P granule. Expressed in Psub1 and germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C18G1.4a | |||||||
| C18G1.4b | |||||||||
| Corresponding_transcript | C18G1.4a.1 | ||||||||
| C18G1.4b.1 | |||||||||
| Other_sequence | CBC01460_1 | ||||||||
| CRC05530_1 | |||||||||
| Associated_feature | WBsf999864 | ||||||||
| WBsf231692 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr3000 | ||||||||
| Expr14402 | |||||||||
| Expr1011382 | |||||||||
| Expr1031910 | |||||||||
| Expr1145014 | |||||||||
| Expr2014862 | |||||||||
| Expr2033097 | |||||||||
| Drives_construct | WBCnstr00005288 | ||||||||
| WBCnstr00035756 | |||||||||
| Construct_product (11) | |||||||||
| Regulate_expr_cluster (16) | |||||||||
| Antibody | WBAntibody00000913 | ||||||||
| WBAntibody00001420 | |||||||||
| WBAntibody00001613 | |||||||||
| WBAntibody00001915 | |||||||||
| WBAntibody00001916 | |||||||||
| WBAntibody00002249 | |||||||||
| WBAntibody00002741 | |||||||||
| WBAntibody00002770 | |||||||||
| WBAntibody00002947 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (148) | |||||||||
| Map_info | Map | V | Position | -4.25718 | Error | 0.02519 | |||
| Positive | Positive_clone | C18G1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5527 | |||||||
| Pseudo_map_position | |||||||||
| Reference (59) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
