WormBase Tree Display for Gene: WBGene00004172
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| WBGene00004172 | SMap | S_parent | Sequence | Y75B8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pqn-92 | Person_evidence | WBPerson625 | |||||
| Sequence_name | Y75B8A.27 | ||||||||
| Molecular_name | Y75B8A.27 | ||||||||
| Y75B8A.27.1 | |||||||||
| CE37298 | |||||||||
| Other_name | CELE_Y75B8A.27 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pqn-92 | ||||||||
| DB_info | Database | AceView | gene | 3N399 | |||||
| WormQTL | gene | WBGene00004172 | |||||||
| WormFlux | gene | WBGene00004172 | |||||||
| NDB | locus_tag | CELE_Y75B8A.27 | |||||||
| NCBI | gene | 190711 | |||||||
| RefSeq | protein | NM_067198.6 | |||||||
| TREEFAM | TREEFAM_ID | TF322788 | |||||||
| TrEMBL | UniProtAcc | Q9XW82 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XW82 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 11 Aug 2004 11:07:01 | WBPerson1983 | Event | Split_into | WBGene00023483 | ||||
| Split_into | WBGene00023483 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (159) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00008945 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00013822 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00023483 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044211 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00013559 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Expressed in head neurons and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y75B8A.27 | |||||||
| Corresponding_CDS_history | Y75B8A.27:wp130 | ||||||||
| Corresponding_transcript | Y75B8A.27.1 | ||||||||
| Associated_feature | WBsf994612 | ||||||||
| WBsf994613 | |||||||||
| WBsf225896 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021445 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027546 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026956 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2136 | ||||||||
| Expr1020079 | |||||||||
| Expr1032034 | |||||||||
| Expr1161873 | |||||||||
| Expr2015082 | |||||||||
| Expr2033318 | |||||||||
| Microarray_results | SMD_Y75B8A.27 | ||||||||
| A_12_P134450 | |||||||||
| GPL14144_Y75B8A.27_1151-1210_0.952_1_A | |||||||||
| GPL19516_CGZ0054772 | |||||||||
| GPL21109_Y75B8A.27 | |||||||||
| GPL8304_CE_WBGene00004172_A | |||||||||
| GPL8304_CE_WBGene00004172_B | |||||||||
| GPL8673_Y75B8A_27P00075 | |||||||||
| GPL8673_Y75B8A_27P00354 | |||||||||
| GPL8673_Y75B8A_27P00692 | |||||||||
| Expression_cluster (162) | |||||||||
| Interaction | WBInteraction000359713 | ||||||||
| WBInteraction000444090 | |||||||||
| Map_info | Map | III | Position | 16.3596 | Error | 0.018 | |||
| Positive | Positive_clone | Y75B8A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
