WormBase Tree Display for Gene: WBGene00005641

WBGene00005641 SMap: S_parent: Sequence: D1022
  Identity: Version: 1
    Name: CGC_name: sro-1 Person_evidence: WBPerson42
      Sequence_name: D1022.6
      Molecular_name: D1022.6
        D1022.6.1
        CE53772
      Other_name: CELE_D1022.6 Accession_evidence: NDB BX284602
      Public_name: sro-1
    DB_info: Database: AceView gene 2H750
        WormQTL gene WBGene00005641
        WormFlux gene WBGene00005641
        NDB locus_tag CELE_D1022.6
        Panther gene CAEEL|WormBase=WBGene00005641|UniProtKB=Q18929
          family PTHR24240
        NCBI gene 191958
        RefSeq protein NM_001377819.1
        TrEMBL UniProtAcc Q18929
        UniProt_GCRP UniProtAcc Q18929
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:38 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sro
    Allele (79)
    Legacy_information: [C.elegansII] NMK. Encodes predicted receptor, distant similarity to opsin. sro-1:GFP expressedin sensory neuron ADL, neuron SIA. [Troemel et al. 1995; CX]
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog (26)
    Paralog: WBGene00017176 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00007006 Caenorhabditis elegans From_analysis: Panther
      WBGene00019012 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to be located in membrane. Expressed in SIADL; SIADR; SIAVL; and SIAVR. Is an ortholog of human OPN4 (opsin 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: D1022.6
    Corresponding_CDS_history: D1022.6:wp124
      D1022.6:wp274
    Corresponding_transcript: D1022.6.1
    Other_sequence (11)
    Associated_feature: WBsf988452
      WBsf988453
      WBsf1012539
      WBsf1012540
      WBsf223343
  Experimental_info: RNAi_result: WBRNAi00012503 Inferred_automatically: RNAi_primary
      WBRNAi00043354 Inferred_automatically: RNAi_primary
      WBRNAi00012507 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr305
      Expr15421
      Expr1028297
      Expr1147333
      Expr2016601
      Expr2034793
    Drives_construct: WBCnstr00011099
      WBCnstr00034824
    Construct_product: WBCnstr00011099
      WBCnstr00034824
    Microarray_results (17)
    Expression_cluster (111)
    Interaction: WBInteraction000296392
  Map_info: Map: II Position: 0.503151 Error: 2.3e-05
    Positive: Positive_clone: D1022 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00002314
    WBPaper00005965
    WBPaper00012979
    WBPaper00015440
    WBPaper00027256
    WBPaper00028910
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene