WormBase Tree Display for Gene: WBGene00006359
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| WBGene00006359 | SMap | S_parent | Sequence | B0336 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | swp-1 | |||||||
| Sequence_name | B0336.9 | ||||||||
| Molecular_name (23) | |||||||||
| Other_name | CeSWAP | Accession_evidence | EMBL | U06932 | |||||
| U06933 | |||||||||
| CELE_B0336.9 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | swp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swp | ||||||||
| Allele (55) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00056375 | ||||||||
| 00056376 | |||||||||
| 00056377 | |||||||||
| 00056378 | |||||||||
| 00113966 | |||||||||
| 00113967 | |||||||||
| Contained_in_operon | CEOP3328 | ||||||||
| Ortholog (15) | |||||||||
| Paralog | WBGene00009200 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | swp-1 encodes a protein containing two SWAP (Suppressor-of-White-APricot splicing regulator) domains that have been implicated in RNA binding; orthologous to C. briggsae CBG09000. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Is an ortholog of human SFSWAP (splicing factor SWAP). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0336.9a | |||||||
| B0336.9b | |||||||||
| B0336.9c | |||||||||
| B0336.9d | |||||||||
| B0336.9e | |||||||||
| Corresponding_transcript (13) | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf226719 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00066603 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009717 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027627 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005261 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038954 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018391 | ||||||||
| Expr1032561 | |||||||||
| Expr1143131 | |||||||||
| Expr2017154 | |||||||||
| Expr2035290 | |||||||||
| Microarray_results (50) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | III | Position | -1.45009 | Error | 0.000593 | |||
| Positive | Positive_clone | B0336 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002077 | ||||||||
| WBPaper00029075 | |||||||||
| WBPaper00032116 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
