WormBase Tree Display for Gene: WBGene00006388
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| WBGene00006388 | SMap | S_parent | Sequence | F54F7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | taf-7.1 | |||||||
| Sequence_name | F54F7.1 | ||||||||
| Molecular_name | F54F7.1 | ||||||||
| F54F7.1.1 | |||||||||
| CE03416 | |||||||||
| Other_name | CELE_F54F7.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | taf-7.1 | ||||||||
| DB_info | Database | AceView | gene | XM454 | |||||
| WormQTL | gene | WBGene00006388 | |||||||
| WormFlux | gene | WBGene00006388 | |||||||
| NDB | locus_tag | CELE_F54F7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006388|UniProtKB=Q20788 | |||||||
| family | PTHR12228 | ||||||||
| NCBI | gene | 192053 | |||||||
| RefSeq | protein | NM_077575.4 | |||||||
| TREEFAM | TREEFAM_ID | TF313044 | |||||||
| TrEMBL | UniProtAcc | Q20788 | |||||||
| UniProt_GCRP | UniProtAcc | Q20788 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | taf | ||||||||
| Allele (32) | |||||||||
| Strain | WBStrain00032205 | ||||||||
| WBStrain00036644 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00006389 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The taf-7.1 gene encodes an ortholog of mammalian TATA-binding protein associated factor TAF7L (TAFIIQ, OMIM:300314) that in mice exhibits testis-specific expression; TAF-7 function in C. elegans is not yet known, as taf-7 inactivation by RNA interference does not result in any obvious developmental defects. | Paper_evidence | WBPaper00004890 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable histone acetyltransferase regulator activity and transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is an ortholog of human TAF7 (TATA-box binding protein associated factor 7) and TAF7L (TATA-box binding protein associated factor 7 like). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54F7.1 | |||||||
| Corresponding_transcript | F54F7.1.1 | ||||||||
| Other_sequence (22) | |||||||||
| Associated_feature | WBsf1007126 | ||||||||
| WBsf1023943 | |||||||||
| WBsf238007 | |||||||||
| WBsf238008 | |||||||||
| WBsf238009 | |||||||||
| Transcription_factor | WBTranscriptionFactor000737 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00032816 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015658 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113016 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113246 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048378 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017758 | ||||||||
| Expr1032585 | |||||||||
| Expr1152167 | |||||||||
| Expr2017218 | |||||||||
| Expr2035354 | |||||||||
| Drives_construct | WBCnstr00034378 | ||||||||
| Construct_product | WBCnstr00034378 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (111) | |||||||||
| Map_info | Map | X | Position | 6.73673 | Error | 0.000773 | |||
| Positive | Positive_clone | F54F7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004890 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029038 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Sequence connection from [source: A Walker] | ||||||||
| This gene was previously called taf-8.1 [krb 020614] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
