WormBase Tree Display for Gene: WBGene00006389

WBGene00006389 SMap: S_parent: Sequence: Y111B2A
  Identity: Version: 1
    Name: CGC_name: taf-7.2
      Sequence_name: Y111B2A.16
      Molecular_name: Y111B2A.16
        Y111B2A.16.1
        CE24137
      Other_name: CELE_Y111B2A.16 Accession_evidence: NDB BX284603
      Public_name: taf-7.2
    DB_info: Database: AceView gene 3N762
        WormQTL gene WBGene00006389
        WormFlux gene WBGene00006389
        NDB locus_tag CELE_Y111B2A.16
        Panther gene CAEEL|WormBase=WBGene00006389|UniProtKB=Q9NEW8
          family PTHR12228
        NCBI gene 176686
        RefSeq protein NM_001392220.1
        TREEFAM TREEFAM_ID TF313044
        TrEMBL UniProtAcc Q9NEW8
        UniProt_GCRP UniProtAcc Q9NEW8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: taf
    Allele (88)
    RNASeq_FPKM (74)
    GO_annotation: 00096510
      00096511
      00096512
      00096513
      00096514
      00114002
      00114003
    Contained_in_operon: CEOP3799
    Ortholog (39)
    Paralog: WBGene00006388 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is an ortholog of human TAF7 (TATA-box binding protein associated factor 7) and TAF7L (TATA-box binding protein associated factor 7 like). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y111B2A.16
    Corresponding_transcript: Y111B2A.16.1
    Other_sequence: JI464868.1
      MH07439
    Associated_feature: WBsf651549
      WBsf227676
  Experimental_info: RNAi_result: WBRNAi00055346 Inferred_automatically: RNAi_primary
      WBRNAi00019883 Inferred_automatically: RNAi_primary
      WBRNAi00055347 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011462
      Expr1032586
      Expr1158878
      Expr2017219
      Expr2035355
    Microarray_results (17)
    Expression_cluster (96)
    Interaction (53)
  Map_info: Map: III Position: 18.1233 Error: 0.015678
    Positive: Positive_clone: Y111B2A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004890
    WBPaper00029038
    WBPaper00038491
    WBPaper00055090
    WBPaper00062625
  Remark: Sequence connection from [source: A Walker]
    This gene was previously called taf-8.2 [krb 020614]
    The sequence connection has been updated to .16 from .u [krb 020614]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene