WormBase Tree Display for Gene: WBGene00006394

WBGene00006394 SMap: S_parent: Sequence: K10D3
  Identity: Version: 1
    Name: CGC_name: taf-11.2
      Sequence_name: K10D3.3
      Molecular_name: K10D3.3
        K10D3.3.1
        CE51382
      Other_name: CELE_K10D3.3 Accession_evidence: NDB BX284601
      Public_name: taf-11.2
    DB_info: Database: AceView gene 1H709
        WormQTL gene WBGene00006394
        WormFlux gene WBGene00006394
        NDB locus_tag CELE_K10D3.3
        Panther gene CAEEL|WormBase=WBGene00006394|UniProtKB=Q21417
          family PTHR13218
        NCBI gene 172451
        RefSeq protein NM_059618.6
        TREEFAM TREEFAM_ID TF315132
        TrEMBL UniProtAcc Q21417
        UniProt_GCRP UniProtAcc Q21417
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: taf
    Allele (22)
    Strain: WBStrain00036630
    RNASeq_FPKM (74)
    GO_annotation: 00071569
      00071570
      00071571
      00071572
      00071573
      00114015
      00114016
      00114017
      00114018
      00114019
    Ortholog (40)
    Paralog: WBGene00006393 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006395 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is an ortholog of several human genes including TAF11 (TATA-box binding protein associated factor 11); TAF11L4 (TATA-box binding protein associated factor 11 like 4); and TAF11L6 (TATA-box binding protein associated factor 11 like 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K10D3.3
    Corresponding_CDS_history: K10D3.3:wp252
    Corresponding_transcript: K10D3.3.1
    Other_sequence: JI472121.1
    Associated_feature: WBsf643427
      WBsf984094
      WBsf217954
      WBsf217955
      WBsf217956
    Transcription_factor: WBTranscriptionFactor000369
  Experimental_info: RNAi_result: WBRNAi00050537 Inferred_automatically: RNAi_primary
      WBRNAi00003979 Inferred_automatically: RNAi_primary
      WBRNAi00117656 Inferred_automatically: RNAi_primary
      WBRNAi00002121 Inferred_automatically: RNAi_primary
      WBRNAi00113020 Inferred_automatically: RNAi_primary
      WBRNAi00116598 Inferred_automatically: RNAi_primary
      WBRNAi00113250 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013074
      Expr1032591
      Expr1154242
      Expr2017207
      Expr2035343
    Drives_construct: WBCnstr00034373
    Construct_product: WBCnstr00034373
    Antibody: WBAntibody00000411
    Microarray_results (17)
    Expression_cluster (191)
    Interaction (133)
  Map_info: Map: I Position: 1.79301 Error: 0.001364
    Positive: Positive_clone: K10D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004890
    WBPaper00027309
    WBPaper00029038
    WBPaper00038491
    WBPaper00040120
    WBPaper00055090
    WBPaper00064339
    WBPaper00065308
  Remark: Sequence connection from [source: A Walker]
    This gene was previously called taf-7.2 [krb 020614]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene