WormBase Tree Display for Gene: WBGene00006409
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WBGene00006409 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C09G9 | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | hdl-2 | Person_evidence | WBPerson260 | |||||
Sequence_name | C09G9.4 | ||||||||
Molecular_name | C09G9.4 | ||||||||
C09G9.4.1 | |||||||||
CE40800 | |||||||||
Other_name | tag-19 | ||||||||
CELE_C09G9.4 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | hdl-2 | ||||||||
DB_info | Database | AceView | gene | 4J641 | |||||
WormQTL | gene | WBGene00006409 | |||||||
WormFlux | gene | WBGene00006409 | |||||||
NDB | locus_tag | CELE_C09G9.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006409|UniProtKB=Q17874 | |||||||
family | PTHR11999 | ||||||||
NCBI | gene | 182464 | |||||||
RefSeq | protein | NM_069138.5 | |||||||
TREEFAM | TREEFAM_ID | TF313863 | |||||||
TrEMBL | UniProtAcc | Q17874 | |||||||
UniProt_GCRP | UniProtAcc | Q17874 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 02 Mar 2012 16:42:47 | WBPerson2970 | Name_change | CGC_name | hdl-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hdl | ||||||||
Allele (39) | |||||||||
Strain | WBStrain00035590 | ||||||||
In_cluster | conserved_RDE-1_cluster | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00059513 | ||||||||
00059514 | |||||||||
00059515 | |||||||||
00059516 | |||||||||
00114035 | |||||||||
00114036 | |||||||||
00114037 | |||||||||
00114038 | |||||||||
00114039 | |||||||||
Ortholog (25) | |||||||||
Paralog | WBGene00000239 | Caenorhabditis elegans | From_analysis (3) | ||||||
WBGene00001839 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00006562 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00015467 | Caenorhabditis elegans | From_analysis (3) | |||||||
WBGene00004981 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006418 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006762 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007593 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022427 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | tag-19 superficially resembles aromatic-L-amino-acid/L-histidine decarboxylases; however, it is distantly related, being no closer to them than to glutamine decarboxylase/sphingosinge lyase (e.g., tag-38, spl-1); tag-19 thus might be termed a Pyridoxal-phosphate (PLP) dependent decarboxylase-like protei, but is missing the absolutely conserved Lys residue of all PLP-DCs (hence the -like would be needed); tag-19 is dispensable in mass RNAi assays. | Paper_evidence | WBPaper00006395 | |||||
WBPaper00025054 | |||||||||
Person_evidence | WBPerson384 | ||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 05 May 2005 00:00:00 | ||||||||
Automated_description | Predicted to enable carboxy-lyase activity. Predicted to be involved in amino acid metabolic process. Predicted to be located in cytoplasm. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C09G9.4 | |||||||
Corresponding_CDS_history | C09G9.4:wp109 | ||||||||
C09G9.4:wp173 | |||||||||
Corresponding_transcript | C09G9.4.1 | ||||||||
Associated_feature | WBsf997300 | ||||||||
WBsf1017892 | |||||||||
WBsf228751 | |||||||||
Experimental_info | RNAi_result | WBRNAi00040246 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010555 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028745 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1029162 | ||||||||
Expr1144316 | |||||||||
Expr2012391 | |||||||||
Expr2030627 | |||||||||
Drives_construct | WBCnstr00037913 | ||||||||
Construct_product | WBCnstr00037913 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (146) | |||||||||
Interaction (31) | |||||||||
Map_info | Map | IV | Position | 3.98949 | Error | 0.002163 | |||
Positive | Positive_clone | C09G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00024422 | ||||||||
Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |