WormBase Tree Display for Gene: WBGene00006409
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WBGene00006409 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C09G9 | ||||
Identity | Version | 2 | |||||
Name | CGC_name | hdl-2 | Person_evidence | WBPerson260 | |||
Sequence_name | C09G9.4 | ||||||
Molecular_name | C09G9.4 | ||||||
C09G9.4.1 | |||||||
CE40800 | |||||||
Other_name | tag-19 | ||||||
CELE_C09G9.4 | Accession_evidence | NDB | BX284604 | ||||
Public_name | hdl-2 | ||||||
DB_info | Database | AceView | gene | 4J641 | |||
WormQTL | gene | WBGene00006409 | |||||
WormFlux | gene | WBGene00006409 | |||||
NDB | locus_tag | CELE_C09G9.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006409|UniProtKB=Q17874 | |||||
family | PTHR11999 | ||||||
NCBI | gene | 182464 | |||||
RefSeq | protein | NM_069138.5 | |||||
TREEFAM | TREEFAM_ID | TF313863 | |||||
TrEMBL | UniProtAcc | Q17874 | |||||
UniProt_GCRP | UniProtAcc | Q17874 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hdl | ||||||
Allele (39) | |||||||
Strain | WBStrain00035590 | ||||||
In_cluster | conserved_RDE-1_cluster | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00059513 | ||||||
00059514 | |||||||
00059515 | |||||||
00059516 | |||||||
00114035 | |||||||
00114036 | |||||||
00114037 | |||||||
00114038 | |||||||
00114039 | |||||||
Ortholog (25) | |||||||
Paralog | WBGene00000239 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001839 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00006562 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00015467 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00004981 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00006418 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00006762 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00007593 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00022427 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | tag-19 superficially resembles aromatic-L-amino-acid/L-histidine decarboxylases; however, it is distantly related, being no closer to them than to glutamine decarboxylase/sphingosinge lyase (e.g., tag-38, spl-1); tag-19 thus might be termed a Pyridoxal-phosphate (PLP) dependent decarboxylase-like protei, but is missing the absolutely conserved Lys residue of all PLP-DCs (hence the -like would be needed); tag-19 is dispensable in mass RNAi assays. | Paper_evidence | WBPaper00006395 | |||
WBPaper00025054 | |||||||
Person_evidence | WBPerson384 | ||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 05 May 2005 00:00:00 | ||||||
Automated_description | Predicted to enable carboxy-lyase activity. Predicted to be involved in amino acid metabolic process. Predicted to be located in cytoplasm. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C09G9.4 | |||||
Corresponding_CDS_history | C09G9.4:wp109 | ||||||
C09G9.4:wp173 | |||||||
Corresponding_transcript | C09G9.4.1 | ||||||
Associated_feature | WBsf997300 | ||||||
WBsf1017892 | |||||||
WBsf228751 | |||||||
Experimental_info | RNAi_result | WBRNAi00040246 | Inferred_automatically | RNAi_primary | |||
WBRNAi00010555 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028745 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1029162 | ||||||
Expr1144316 | |||||||
Expr2012391 | |||||||
Expr2030627 | |||||||
Drives_construct | WBCnstr00037913 | ||||||
Construct_product | WBCnstr00037913 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (146) | |||||||
Interaction (31) | |||||||
Map_info | Map | IV | Position | 3.98949 | Error | 0.002163 | |
Positive | Positive_clone | C09G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00024422 | ||||||
Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |