WormBase Tree Display for Gene: WBGene00006450
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| WBGene00006450 | SMap | S_parent | Sequence | C28C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tag-77 | Person_evidence | WBPerson201 | |||||
| Sequence_name | C28C12.10 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | CELE_C28C12.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tag-77 | ||||||||
| DB_info | Database | AceView | gene | 4J268 | |||||
| WormQTL | gene | WBGene00006450 | |||||||
| WormFlux | gene | WBGene00006450 | |||||||
| NDB | locus_tag | CELE_C28C12.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006450|UniProtKB=X5LX76 | |||||||
| family | PTHR12673 | ||||||||
| NCBI | gene | 177656 | |||||||
| RefSeq | protein | NM_069054.6 | |||||||
| NM_001380370.1 | |||||||||
| NM_001307116.3 | |||||||||
| NM_001307117.3 | |||||||||
| NM_001307115.4 | |||||||||
| NM_001380369.1 | |||||||||
| SwissProt | UniProtAcc | X5LX76 | |||||||
| UniProt_GCRP | UniProtAcc | X5LX76 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (69) | |||||||||
| Strain | WBStrain00035705 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00105512 | ||||||||
| 00105513 | |||||||||
| 00105514 | |||||||||
| 00105515 | |||||||||
| 00105516 | |||||||||
| 00105517 | |||||||||
| 00114092 | |||||||||
| 00114093 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00001366 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001490 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006431 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013682 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be located in cytoplasm. Expressed in hermaphrodite gonad and somatic gonad precursor. Is an ortholog of human FGD5 (FYVE, RhoGEF and PH domain containing 5) and FGD6 (FYVE, RhoGEF and PH domain containing 6). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C28C12.10a | |||||||
| C28C12.10b | |||||||||
| C28C12.10c | |||||||||
| C28C12.10d | |||||||||
| C28C12.10e | |||||||||
| C28C12.10f | |||||||||
| Corresponding_CDS_history | C28C12.10a:wp274 | ||||||||
| C28C12.10b:wp274 | |||||||||
| Corresponding_transcript | C28C12.10a.1 | ||||||||
| C28C12.10b.1 | |||||||||
| C28C12.10c.1 | |||||||||
| C28C12.10d.1 | |||||||||
| C28C12.10e.1 | |||||||||
| C28C12.10f.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf652002 | ||||||||
| WBsf668120 | |||||||||
| WBsf997232 | |||||||||
| WBsf230439 | |||||||||
| WBsf230440 | |||||||||
| WBsf230441 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011290 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001877 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041395 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078218 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8746 | ||||||||
| Expr1023797 | |||||||||
| Expr1032627 | |||||||||
| Expr1145426 | |||||||||
| Expr2017291 | |||||||||
| Expr2035426 | |||||||||
| Drives_construct | WBCnstr00005762 | ||||||||
| WBCnstr00034351 | |||||||||
| Construct_product | WBCnstr00034351 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction | WBInteraction000431224 | ||||||||
| Map_info | Map | IV | Position | 3.87119 | Error | 0.002709 | |||
| Positive | Positive_clone | C28C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028279 | ||||||||
| WBPaper00031805 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040813 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
