WormBase Tree Display for Gene: WBGene00006518

WBGene00006518 SMap: S_parent: Sequence: F27D4
  Identity: Version: 2
    Name: CGC_name: bckd-1B Person_evidence: WBPerson151
      Sequence_name: F27D4.5
      Molecular_name: F27D4.5
        F27D4.5.1
        CE05736
        F27D4.5.2
      Other_name: tag-173 Person_evidence: WBPerson201
        CELE_F27D4.5 Accession_evidence: NDB BX284601
      Public_name: bckd-1B
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 29 Nov 2016 11:06:22 WBPerson2970 Name_change: CGC_name: bckd-1B
                Other_name: tag-173
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bckd
    Allele (18)
    Strain: WBStrain00035884
    RNASeq_FPKM (74)
    GO_annotation: 00086305
      00086306
      00086307
      00086308
      00086309
      00086310
      00114179
    Contained_in_operon: CEOP1420
    Ortholog (36)
    Paralog: WBGene00008506 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015413 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable catalytic activity. Involved in positive regulation of fatty acid biosynthetic process and positive regulation of nematode larval development. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Is an ortholog of human BCKDHB (branched chain keto acid dehydrogenase E1 subunit beta). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9269 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:987)
  Molecular_info: Corresponding_CDS: F27D4.5
    Corresponding_transcript: F27D4.5.1
      F27D4.5.2
    Other_sequence (106)
    Associated_feature: WBsf218067
      WBsf218068
  Experimental_info: RNAi_result: WBRNAi00025281 Inferred_automatically: RNAi_primary
      WBRNAi00003504 Inferred_automatically: RNAi_primary
      WBRNAi00073055 Inferred_automatically: RNAi_primary
      WBRNAi00025282 Inferred_automatically: RNAi_primary
      WBRNAi00031497 Inferred_automatically: RNAi_primary
      WBRNAi00106980 Inferred_automatically: RNAi_primary
      WBRNAi00116648 Inferred_automatically: RNAi_primary
      WBRNAi00084393 Inferred_automatically: RNAi_primary
      WBRNAi00045741 Inferred_automatically: RNAi_primary
      WBRNAi00073056 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022549
      Expr1032673
      Expr1149648
      Expr2009582
      Expr2027819
    Drives_construct: WBCnstr00034329
    Construct_product: WBCnstr00034329
    Microarray_results (23)
    Expression_cluster (133)
    SAGE_tag: SAGE:tattttcttc Strand: Sense
        Unambiguously_mapped
      SAGE:aagctccgatttcttct Strand: Sense
        Unambiguously_mapped
      SAGE:gattcggatc Strand: Antisense
      SAGE:tagtagagagtgttcaa Strand: Sense
        Unambiguously_mapped
      SAGE:aagctccgat Strand: Sense
        Unambiguously_mapped
      SAGE:ttgctcttga Strand: Sense
        Unambiguously_mapped
    Interaction (42)
  Map_info: Map: I Position: 2.31687 Error: 0.007759
    Positive: Positive_clone: F27D4 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4145
        4366
        5665
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00045076
    WBPaper00055090
    WBPaper00060459
    WBPaper00064339
    WBPaper00065140
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene