WormBase Tree Display for Gene: WBGene00006982
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| WBGene00006982 | SMap | S_parent | Sequence | Y48A6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | zig-5 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y48A6A.1 | ||||||||
| Molecular_name | Y48A6A.1 | ||||||||
| Y48A6A.1.1 | |||||||||
| CE31735 | |||||||||
| Other_name | CELE_Y48A6A.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | zig-5 | ||||||||
| DB_info | Database | AceView | gene | 3M40 | |||||
| WormQTL | gene | WBGene00006982 | |||||||
| WormFlux | gene | WBGene00006982 | |||||||
| NDB | locus_tag | CELE_Y48A6A.1 | |||||||
| NCBI | gene | 176527 | |||||||
| RefSeq | protein | NM_067004.7 | |||||||
| SwissProt | UniProtAcc | Q9XXD7 | |||||||
| TREEFAM | TREEFAM_ID | TF343606 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XXD7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zig | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00036013 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104294 | ||||||||
| 00104295 | |||||||||
| 00104296 | |||||||||
| 00104297 | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00006979 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00006980 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00006981 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | zig-5 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-5::gfp reporter fusion is expressed in a number of neurons, including PVT, VD1-13, RID, AFD, ASK, RIV, RIB, PVQ, DVA, and RIS; zig-5::gfp is detected in the PVT neuron beginning at the three-fold stage of embryogenesis and continuing throughout larval development; loss of zig-5 activity in large-scale RNAi screens has been reported to result in low levels of embryonic lethality. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005064 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Involved in pattern specification process. Predicted to be located in membrane. Expressed in ganglia. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48A6A.1 | |||||||
| Corresponding_CDS_history | Y48A6A.1:wp84 | ||||||||
| Corresponding_transcript | Y48A6A.1.1 | ||||||||
| Other_sequence | CR10038 | ||||||||
| CRC08874_1 | |||||||||
| CJC09682_1 | |||||||||
| Associated_feature | WBsf667428 | ||||||||
| WBsf994200 | |||||||||
| WBsf994201 | |||||||||
| WBsf1015882 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020721 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037213 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073367 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006419 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056856 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000841 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1170 | ||||||||
| Expr1751 | |||||||||
| Expr6996 | |||||||||
| Expr11114 | |||||||||
| Expr1019240 | |||||||||
| Expr1160309 | |||||||||
| Expr2018144 | |||||||||
| Expr2036281 | |||||||||
| Marker61 | |||||||||
| Marker65 | |||||||||
| Drives_construct | WBCnstr00001544 | ||||||||
| WBCnstr00001545 | |||||||||
| WBCnstr00001546 | |||||||||
| WBCnstr00001547 | |||||||||
| WBCnstr00002816 | |||||||||
| WBCnstr00018510 | |||||||||
| WBCnstr00034053 | |||||||||
| Construct_product | WBCnstr00018510 | ||||||||
| WBCnstr00034053 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (173) | |||||||||
| Interaction (77) | |||||||||
| Map_info | Map | III | Position | 5.76977 | Error | 0.015109 | |||
| Positive | Positive_clone | Y48A6A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4943 | |||||||
| 4392 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
