WormBase Tree Display for Gene: WBGene00007027
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| WBGene00007027 | Evidence | Paper_evidence | WBPaper00013412 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y111B2A | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | ssl-1 | Person_evidence | WBPerson268 | |||||
| Sequence_name | Y111B2A.22 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | pqn-81 | CGC_data_submission | |||||||
| Y111B2C.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y111B2C.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y111B2E.c | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y111B2A.22 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | ssl-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 18 May 2004 17:41:46 | WBPerson1845 | Event | Created | |||
| 2 | 18 May 2004 17:42:55 | WBPerson1845 | Event | Acquires_merge | WBGene00004162 | ||||
| Acquires_merge | WBGene00004162 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssl | ||||||||
| Allele (736) | |||||||||
| Strain | WBStrain00027412 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP3824 | ||||||||
| Ortholog (40) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77) | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 09 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP hydrolysis activity and histone binding activity. Involved in negative regulation of cell fate specification. Predicted to be located in nucleus. Predicted to be part of Swr1 complex. Human ortholog(s) of this gene implicated in Floating-Harbor syndrome. Is an ortholog of human SRCAP (Snf2 related CREBBP activator protein). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111358 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16974) | ||||
| Molecular_info | Corresponding_CDS | Y111B2A.22a | |||||||
| Y111B2A.22b | |||||||||
| Y111B2A.22c | |||||||||
| Y111B2A.22d | |||||||||
| Corresponding_CDS_history | Y111B2A.22:wp124 | ||||||||
| Y111B2A.22:wp158 | |||||||||
| Corresponding_transcript | Y111B2A.22a.1 | ||||||||
| Y111B2A.22b.1 | |||||||||
| Y111B2A.22c.1 | |||||||||
| Y111B2A.22d.1 | |||||||||
| Other_sequence (124) | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1016588 | ||||||||
| Expr1033016 | |||||||||
| Expr1158885 | |||||||||
| Expr2016930 | |||||||||
| Expr2035077 | |||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | III | Position | 18.2597 | Error | 0.037977 | |||
| Positive | Positive_clone | Y111B2A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4921 | |||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
