WormBase Tree Display for Sequence: Y111B2A

Y111B2A DNA: Y111B2A 257705
  SMap: S_child (13)
  Structure: From: Source: CHROMOSOME_III
    Overlap_right: ZC482 257600
    Overlap_left: Y49E10
    Clone_left_end: Y111B2A 1
    Clone_right_end: Y49E10 105
      Y111B2A 257705
  DB_info: Database: EMBL NDB_AC AL132904
        NDB_SV AL132904.6
    Secondary_accession: AL132886
      AL132885
      AL132945
      AL132908
      AL132906
      AL132890
      AL132889
    DB_remark: [060419 pad] Clone sequence corrected in line with multiple Transcript reads from a variety of sources. 2 single bp insertions at 230446 and 230465.
      [121025] Sequence correction: SNP 0 bases @ 80493
      [121025] Sequence correction: SNP 0 bases @ 90355
      [121025] Sequence correction: SNP 0 bases @ 190678
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Sulston JE
    From_laboratory: HX
    Date_directory: 060419
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: Y111B2A
    Remark: Transposon Y111B2A.6 converted into an S_Child [020208 kj]
  Properties: Genomic_canonical
    Checksum: MD5: a9639be0f45ea364b69dd2446739a185
    Status: Finished: 24 Jul 2000 00:00:00
      Submitted: 02 Apr 2001 00:00:00
      Annotated: 06 Aug 2001 00:00:00
  Map: Sequence-III Ends: Left: 6474
        Right: 6508
  Interpolated_map_position: III 18.0226
  Assembly_tags: Finished Left 1 6 Y111B2A
    annotation 228063 228045 First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by repH sequence
      1043 1087 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - SIL of sp27c12
      14404 14491 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primers only here
      70450 70485 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - single direction primers in inverted repeat
      110255 110545 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - this region contains reads from SIL of sp15g11
      110727 110852 First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join made using repK data
      110728 110853 First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join made using repK data
      117271 117433 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primer only over inverted repeat
      117275 117275 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primers only here, unable to sequence terminators.
      117638 117697 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - single direction primers only here
      178263 178307 First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by inv. rpt
      186029 187279 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Repeat contains 156bp single clone region. so95e8 SIL confirms join but does not cover the single clone region. Edited to the remainder of the repeat.
      223406 223443 First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - area contained within IR-2 rpt, bridged by so82b5 and sp12c12
      223456 223488 First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - area contained within IR-2 rpt, bridged by so82b5 and sp12c12
      240295 240303 First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by repJ
    Finished Right 257700 257705 Y111B2A
  Method: Genomic_canonical