WormBase Tree Display for Gene: WBGene00007710
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WBGene00007710 | SMap | S_parent | Sequence | C25A1 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rsa | ||||||
Allele (28) | |||||||
Strain | WBStrain00034776 | ||||||
WBStrain00034777 | |||||||
WBStrain00034764 | |||||||
WBStrain00007353 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (22) | |||||||
Ortholog (28) | |||||||
Paralog | WBGene00003563 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00003564 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00003565 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008307 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008998 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00015867 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021116 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | rsa-1 encodes a protein phosphatase 2A (PP2A) regulatory subunit of the B'' class; RSA-1 is required for localization of C. elegans PP2A to centrosomes and for mitotic spindle assembly; RSA-1 physically interacts with the LET-92 PP2A catalytic subunit and the PAA-1 PP2A structural subunit; centrosomal levels of PAA-1 are decreased in rsa-1 mutant animals; RSA-1 localizes to centrosomes. | Paper_evidence | WBPaper00041923 | |||
WBPaper00028993 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 22 Jan 2013 00:00:00 | ||||||
Automated_description | Enables protein phosphatase 2A binding activity. Involved in embryo development; mitotic spindle assembly; and protein localization to organelle. Located in centrosome. Human ortholog(s) of this gene implicated in spermatogenic failure 36. Is an ortholog of human PPP2R3C (protein phosphatase 2 regulatory subunit B''gamma). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0111921 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17485) | ||
Molecular_info | Corresponding_CDS | C25A1.9a | |||||
C25A1.9b | |||||||
Corresponding_transcript | C25A1.9a.1 | ||||||
C25A1.9b.1 | |||||||
Other_sequence | CSC01078_1 | ||||||
CR04352 | |||||||
CRC11344_1 | |||||||
CBC08799_1 | |||||||
FD515029.1 | |||||||
FD514945.1 | |||||||
Associated_feature | WBsf643664 | ||||||
WBsf976560 | |||||||
WBsf976561 | |||||||
WBsf984937 | |||||||
WBsf1010500 | |||||||
WBsf218404 | |||||||
Experimental_info | RNAi_result (13) | ||||||
Expr_pattern | Expr4518 | ||||||
Expr4519 | |||||||
Expr15732 | |||||||
Expr1013688 | |||||||
Expr1033339 | |||||||
Expr1145182 | |||||||
Expr1200214 | |||||||
Expr2015546 | |||||||
Expr2033781 | |||||||
Drives_construct | WBCnstr00012075 | ||||||
WBCnstr00033538 | |||||||
Construct_product | WBCnstr00004941 | ||||||
WBCnstr00004943 | |||||||
WBCnstr00012075 | |||||||
WBCnstr00033538 | |||||||
Antibody | WBAntibody00001217 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (178) | |||||||
Interaction (207) | |||||||
Map_info | Map | I | Position | 4.7267 | Error | 0.001652 | |
Positive | Positive_clone | C25A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |