WormBase Tree Display for Gene: WBGene00009314
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| WBGene00009314 | SMap | S_parent | Sequence | F32B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | phm-2 | Paper_evidence | WBPaper00056538 | |||||
| Sequence_name | F32B4.4 | ||||||||
| Molecular_name (11) | |||||||||
| Other_name | CELE_F32B4.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | phm-2 | ||||||||
| DB_info | Database | AceView | gene | 1M119 | |||||
| WormQTL | gene | WBGene00009314 | |||||||
| WormFlux | gene | WBGene00009314 | |||||||
| NDB | locus_tag | CELE_F32B4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009314|UniProtKB=O62203 | |||||||
| family | PTHR15683 | ||||||||
| NCBI | gene | 185193 | |||||||
| RefSeq | protein | NM_001264738.3 | |||||||
| NM_001392949.1 | |||||||||
| NM_001026269.4 | |||||||||
| SwissProt | UniProtAcc | O62203 | |||||||
| UniProt_GCRP | UniProtAcc | O62203 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 Oct 2004 17:42:23 | WBPerson1971 | Event | Acquires_merge | WBGene00009317 | ||||
| 3 | 02 Jan 2021 22:52:42 | WBPerson1983 | Name_change | CGC_name | phm-2 | ||||
| 4 | 19 Apr 2021 03:00:58 | WBPerson1983 | Event | Acquires_merge | WBGene00004018 | ||||
| Acquires_merge | WBGene00004018 | ||||||||
| WBGene00009317 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | phm | ||||||||
| Allele (214) | |||||||||
| Legacy_information | [Leon Avery] In phm-2 pharynxes the muscles that attach behind the terminal bulb are stronger than normal. (Perhaps the attachment of the pm6 muscles is more posterior than normal?) As a consequence the grinder can't return to its fully relaxed position, and the space behind the grinder is usually distorted into a continuously open cavity. | ||||||||
| See also ad538 | |||||||||
| [C.elegansII] ad538 : pharyngeal grinder cannot assume full forward position, terminal bulb muscles appear short (too strong?); space behind the grinder is usually distorted into a continuously open cavity; male spicules protrude.ES2, ME0. OA1: ad597. [Avery 1993; DA] | |||||||||
| Strain | WBStrain00005487 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog | WBGene00027063 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00070851 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WBGene00141148 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WBGene00129945 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WBGene00224012 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| Sp34_10048510 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrI_pilon.g2292 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00237610 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| WBGene00284972 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; intestine; pharynx; somatic nervous system; and vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32B4.4a | |||||||
| F32B4.4b | |||||||||
| F32B4.4c | |||||||||
| Corresponding_CDS_history | F32B4.4a:wp214 | ||||||||
| F32B4.4a:wp225 | |||||||||
| Corresponding_transcript | F32B4.4a.1 | ||||||||
| F32B4.4b.1 | |||||||||
| F32B4.4b.2 | |||||||||
| F32B4.4b.3 | |||||||||
| F32B4.4c.1 | |||||||||
| Other_sequence | AE00737 | ||||||||
| CR09535 | |||||||||
| CRC04736_1 | |||||||||
| CRC11574_1 | |||||||||
| CBC04719_1 | |||||||||
| AYC00003_2 | |||||||||
| CRC05975_1 | |||||||||
| CR02243 | |||||||||
| CR06520 | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046101 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031657 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003558 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003556 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046098 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14438 | ||||||||
| Expr14439 | |||||||||
| Expr1025859 | |||||||||
| Expr1034070 | |||||||||
| Expr1149983 | |||||||||
| Expr2003204 | |||||||||
| Expr2021416 | |||||||||
| Drives_construct | WBCnstr00040874 | ||||||||
| WBCnstr00040875 | |||||||||
| WBCnstr00042719 | |||||||||
| WBCnstr00042721 | |||||||||
| Construct_product | WBCnstr00040875 | ||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (92) | |||||||||
| Map_info | Map | I | Position | 9.10042 | Error | 0.088427 | |||
| Positive | Positive_clone | F32B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 5220 | |||||||
| 6188 | |||||||||
| 5533 | |||||||||
| 6201 | |||||||||
| 6189 | |||||||||
| 6191 | |||||||||
| Multi_point (11) | |||||||||
| Reference (25) | |||||||||
| Remark | Version 2 of this gene was created incorrectly. This gene was not merged into F32B4.7, instead F32B4.7 was merged into this gene | Curator_confirmed | WBPerson1971 | ||||||
| [140610 pad] Gene history inconsistency in this object as noted above, some of the history has been altered. | |||||||||
| Method | Gene |
