WormBase Tree Display for Gene: WBGene00012696
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WBGene00012696 | SMap | S_parent | Sequence | Y39B6A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | reps-1 | Person_evidence | WBPerson1422 | |||||
Sequence_name | Y39B6A.38 | ||||||||
Molecular_name | Y39B6A.38 | ||||||||
Y39B6A.38.1 | |||||||||
CE37856 | |||||||||
Other_name | Y39B6A.g | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y39B6A.38 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | reps-1 | ||||||||
DB_info | Database | AceView | gene | 5T462 | |||||
WormQTL | gene | WBGene00012696 | |||||||
WormFlux | gene | WBGene00012696 | |||||||
NDB | locus_tag | CELE_Y39B6A.38 | |||||||
NCBI | gene | 180241 | |||||||
RefSeq | protein | NM_001383492.1 | |||||||
TREEFAM | TREEFAM_ID | TF316546 | |||||||
TrEMBL | UniProtAcc | Q8MYM6 | |||||||
UniProt_GCRP | UniProtAcc | Q8MYM6 | |||||||
OMIM | gene | 614825 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 05 Dec 2006 15:46:53 | WBPerson1847 | Name_change | CGC_name | reps-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | reps | ||||||||
Allele (107) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (28) | |||||||||
Paralog | WBGene00001224 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00004373 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Automated_description | Expressed in excretory secretory system; intestine; muscle cell; somatic nervous system; and vulva. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Human REPS1 enables SH3 domain binding activity. Is predicted to encode a protein with the following domains: EH domain; EF-hand domain pair; Phosphorylation site; and Cytoskeletal-regulatory complex EF hand. Is an ortholog of human REPS1 (RALBP1 associated Eps domain containing 1) and REPS2 (RALBP1 associated Eps domain containing 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0110734 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15578) | ||||
Molecular_info | Corresponding_CDS | Y39B6A.38 | |||||||
Corresponding_CDS_history | Y39B6A.38:wp136 | ||||||||
Corresponding_transcript | Y39B6A.38.1 | ||||||||
Other_sequence (19) | |||||||||
Associated_feature | WBsf653549 | ||||||||
WBsf1003071 | |||||||||
WBsf1003072 | |||||||||
WBsf1003073 | |||||||||
WBsf1021599 | |||||||||
WBsf1021600 | |||||||||
Experimental_info | RNAi_result | WBRNAi00056195 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr11258 | ||||||||
Expr1012658 | |||||||||
Expr1035614 | |||||||||
Expr1159694 | |||||||||
Expr2015299 | |||||||||
Expr2033533 | |||||||||
Drives_construct | WBCnstr00018523 | ||||||||
Construct_product | WBCnstr00018523 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (56) | |||||||||
Interaction (35) | |||||||||
Map_info | Map | V | Position | 18.4784 | Error | 0.001926 | |||
Positive | Positive_clone | Y39B6A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031546 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00044183 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |