WormBase Tree Display for Gene: WBGene00013842
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| WBGene00013842 | SMap | S_parent | Sequence | ZC47 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | fbxa-34 | Person_evidence | WBPerson655 | ||||||
| Sequence_name | ZC47.10 | |||||||||
| Molecular_name | ZC47.10 | |||||||||
| Other_name | CELE_ZC47.10 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | fbxa-34 | |||||||||
| DB_info | Database | AceView | gene | 3C372 | ||||||
| WormQTL | gene | WBGene00013842 | ||||||||
| NDB | locus_tag | CELE_ZC47.10 | ||||||||
| NCBI | gene | 175291 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-34 | |||||
| 3 | 21 Dec 2005 10:46:43 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | fbxa | |||||||||
| Allele (133) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00022478 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | ||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
| Automated_description | Enriched in muscle cell based on RNA-seq studies. Is affected by several genes including daf-2; eat-2; and npr-1 based on microarray and RNA-seq studies. Is affected by seven chemicals including multi-walled carbon nanotube; Sodium Chloride; and metformin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | ZC47.10:wp18 | ||||||||
| ZC47.10:wp126 | ||||||||||
| Corresponding_pseudogene | ZC47.10 | |||||||||
| Experimental_info | Microarray_results | A_12_P105281 | ||||||||
| Aff_ZC47.10 | ||||||||||
| GPL19516_CGZ0055930 | ||||||||||
| GPL21109_ZC47.10 | ||||||||||
| GPL3518_CE25666 | ||||||||||
| GPL9450_ZC47.10 | ||||||||||
| cea2.p.158371 | ||||||||||
| Expression_cluster (60) | ||||||||||
| Map_info | Map | III | Position | -22.5525 | Error | 0.001776 | ||||
| Positive | Positive_clone | ZC47 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00012854 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
