WormBase Tree Display for Gene: WBGene00014046
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WBGene00014046 | SMap | S_parent | Sequence | ZK666 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | clec-60 | Person_evidence | WBPerson261 | |||
WBPerson655 | |||||||
Sequence_name | ZK666.6 | ||||||
Molecular_name | ZK666.6 | ||||||
ZK666.6.1 | |||||||
CE02391 | |||||||
Other_name | CELE_ZK666.6 | Accession_evidence | NDB | BX284602 | |||
Public_name | clec-60 | ||||||
DB_info | Database (10) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (24) | |||||||
Strain | WBStrain00004708 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00078945 | ||||||
Ortholog (60) | |||||||
Paralog (13) | |||||||
Structured_description | Concise_description | clec-60 encodes a C-type lectin protein with no obvious non-nematode orthologs; clec-60 appears to play a role in the innate immune respone to some bacterial pathogens, including Microbacterium nematophilum and Salmonella enterica; clec-60 transcription is induced 6.6-fold by infection with M. nematophilum, making it one of the most strongly infection-responsive genes (second only to tts-1); CLEC-60 is expressed throughout the larval intestine, with expression continuing in the adult adult primarily in the posterior intestinal cells int8 and int9; CLEC-60 contains an N-terminal von Willebrand factor type A domain and a C-terminal C-type lectin domain. | Paper_evidence | WBPaper00027722 | |||
WBPaper00044718 | |||||||
Person_evidence | WBPerson426 | ||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 19 Feb 2014 00:00:00 | ||||||
Automated_description | Involved in defense response to Gram-positive bacterium. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZK666.6 | |||||
Corresponding_transcript | ZK666.6.1 | ||||||
Other_sequence | FD516125.1 | ||||||
CBC05269_1 | |||||||
CSC01347_1 | |||||||
CSC01143_1 | |||||||
FD516159.1 | |||||||
Associated_feature | WBsf989355 | ||||||
WBsf223790 | |||||||
Experimental_info | RNAi_result | WBRNAi00078250 | Inferred_automatically | RNAi_primary | |||
WBRNAi00110396 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076894 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110394 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022114 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00106798 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038403 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110395 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00082508 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059632 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr3949 | ||||||
Expr12635 | |||||||
Expr1025412 | |||||||
Expr1163042 | |||||||
Expr2010193 | |||||||
Drives_construct | WBCnstr00011773 | ||||||
WBCnstr00015098 | |||||||
WBCnstr00022342 | |||||||
WBCnstr00029353 | |||||||
Construct_product | WBCnstr00029353 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (316) | |||||||
Interaction (81) | |||||||
WBProcess | WBbiopr:00000008 | ||||||
WBbiopr:00000039 | |||||||
Map_info | Map | II | Position | 2.80209 | Error | 0.031689 | |
Positive | Positive_clone | ZK666 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (33) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |