WormBase Tree Display for Gene: WBGene00017538
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| WBGene00017538 | SMap | S_parent | Sequence | F17A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-49 | Person_evidence | WBPerson83 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | F17A9.6 | ||||||||
| Molecular_name | F17A9.6 | ||||||||
| F17A9.6.1 | |||||||||
| CE27970 | |||||||||
| Other_name | CELE_F17A9.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ceh-49 | ||||||||
| DB_info | Database | AceView | gene | 5G600 | |||||
| WormQTL | gene | WBGene00017538 | |||||||
| WormFlux | gene | WBGene00017538 | |||||||
| NDB | locus_tag | CELE_F17A9.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017538|UniProtKB=O16218 | |||||||
| family | PTHR14057 | ||||||||
| NCBI | gene | 179001 | |||||||
| RefSeq | protein | NM_072180.5 | |||||||
| TrEMBL | UniProtAcc | O16218 | |||||||
| UniProt_GCRP | UniProtAcc | O16218 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | ceh-49 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (23) | |||||||||
| Strain | WBStrain00049263 | ||||||||
| WBStrain00048941 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (55) | |||||||||
| Paralog | WBGene00000444 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000459 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000460 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ceh-49 encodes a divergent ONECUT class CUT homeobox protein with a single N-terminal cut domain; CEH-49 has an atypical tyrosine residue at position 48 of its homeodomain rather than a phenylalanine or tryptophan residue; the cut domain may be a compact DNA-binding domain composed of alpha helices; phylogenetically, CEH-49 is (somewhat distantly) affiliated with CEH-48, Drosophila ONECUT, and mammalian HNF6 proteins; CEH-49 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00005164 | |||||
| WBPaper00005654 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in coelomocyte; head muscle; head neurons; intestine; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F17A9.6 | |||||||
| Corresponding_transcript | F17A9.6.1 | ||||||||
| Associated_feature | WBsf978582 | ||||||||
| WBsf233764 | |||||||||
| Transcription_factor | WBTranscriptionFactor000738 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00115830 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031062 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013454 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044864 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7510 | ||||||||
| Expr15592 | |||||||||
| Expr1022894 | |||||||||
| Expr1037532 | |||||||||
| Expr1148824 | |||||||||
| Expr1170016 | |||||||||
| Expr2009890 | |||||||||
| Expr2028130 | |||||||||
| Drives_construct | WBCnstr00012655 | ||||||||
| WBCnstr00015141 | |||||||||
| WBCnstr00015142 | |||||||||
| WBCnstr00027224 | |||||||||
| WBCnstr00042428 | |||||||||
| Construct_product | WBCnstr00027224 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (181) | |||||||||
| Interaction (37) | |||||||||
| Map_info | Map | V | Position | -0.307833 | Error | 0.012681 | |||
| Positive | Positive_clone | F17A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5324 | |||||||
| 4240 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005164 | ||||||||
| WBPaper00011544 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00062568 | |||||||||
| Remark | The gene described in this paper is actually F17A9.6 not F17A9.1 | Paper_evidence | WBPaper00005164 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
