WormBase Tree Display for Gene: WBGene00017742
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| WBGene00017742 | SMap | S_parent | Sequence | F23F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nfyc-1 | Paper_evidence | WBPaper00030771 | |||||
| Person_evidence | WBPerson716 | ||||||||
| Sequence_name | F23F1.1 | ||||||||
| Molecular_name | F23F1.1a | ||||||||
| F23F1.1a.1 | |||||||||
| CE27996 | |||||||||
| F23F1.1b | |||||||||
| CE50568 | |||||||||
| F23F1.1b.1 | |||||||||
| Other_name | CELE_F23F1.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nfyc-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00017742 | |||||
| WormFlux | gene | WBGene00017742 | |||||||
| NDB | locus_tag | CELE_F23F1.1 | |||||||
| Panther | gene | CAEEL|EnsemblGenome=WBGene00017742|UniProtKB=O17072 | |||||||
| family | PTHR10252 | ||||||||
| NCBI | gene | 173385 | |||||||
| RefSeq | protein | NM_061244.8 | |||||||
| NM_001313608.3 | |||||||||
| SwissProt | UniProtAcc | O17072 | |||||||
| UniProt_GCRP | UniProtAcc | O17072 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Jul 2007 08:49:14 | WBPerson2970 | Name_change | CGC_name | nfyc-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nfyc | ||||||||
| Allele (14) | |||||||||
| Strain | WBStrain00052025 | ||||||||
| WBStrain00055555 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP2004 | ||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00009584 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00013150 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables DNA-binding transcription repressor activity. Involved in negative regulation of transcription by RNA polymerase II and tissue development. Located in cytoplasm and perikaryon. Expressed in several structures, including excretory cell; gonad; head neurons; and oocyte. Is an ortholog of human NFYC (nuclear transcription factor Y subunit gamma). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23F1.1a | |||||||
| F23F1.1b | |||||||||
| Corresponding_transcript | F23F1.1a.1 | ||||||||
| F23F1.1b.1 | |||||||||
| Other_sequence | CBC08000_1 | ||||||||
| Associated_feature | WBsf643885 | ||||||||
| WBsf978623 | |||||||||
| WBsf220704 | |||||||||
| WBsf220705 | |||||||||
| WBsf220706 | |||||||||
| Transcription_factor | WBTranscriptionFactor000449 | ||||||||
| WBTranscriptionFactor001158 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr4875 | ||||||||
| Expr7518 | |||||||||
| Expr8634 | |||||||||
| Expr1018885 | |||||||||
| Expr1037616 | |||||||||
| Expr1149340 | |||||||||
| Expr2013991 | |||||||||
| Expr2032231 | |||||||||
| Drives_construct | WBCnstr00012303 | ||||||||
| WBCnstr00012663 | |||||||||
| WBCnstr00027059 | |||||||||
| Construct_product | WBCnstr00012303 | ||||||||
| WBCnstr00017351 | |||||||||
| WBCnstr00017360 | |||||||||
| WBCnstr00027059 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction (74) | |||||||||
| Map_info | Map | II | Position | -17.9562 | Error | 0.005899 | |||
| Positive | Positive_clone | F23F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
