WormBase Tree Display for Gene: WBGene00017929
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WBGene00017929 | SMap | S_parent | Sequence | F29C4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | grld-1 | Paper_evidence | WBPaper00037743 | |||
Person_evidence | WBPerson3993 | ||||||
WBPerson1781 | |||||||
Sequence_name | F29C4.7 | ||||||
Molecular_name | F29C4.7a | ||||||
F29C4.7a.1 | |||||||
CE17724 | |||||||
F29C4.7b | |||||||
CE31493 | |||||||
F29C4.7b.1 | |||||||
Other_name | CELE_F29C4.7 | Accession_evidence | NDB | BX284604 | |||
Public_name | grld-1 | ||||||
DB_info | Database | AceView | gene | 4A876 | |||
WormQTL | gene | WBGene00017929 | |||||
WormFlux | gene | WBGene00017929 | |||||
NDB | locus_tag | CELE_F29C4.7 | |||||
Panther | gene | CAEEL|WormBase=WBGene00017929|UniProtKB=H2KYB8 | |||||
family | PTHR23189 | ||||||
NCBI | gene | 176827 | |||||
RefSeq | protein | NM_171238.5 | |||||
NM_171237.8 | |||||||
TREEFAM | TREEFAM_ID | TF354224 | |||||
TrEMBL | UniProtAcc | Q8MXG5 | |||||
H2KYB8 | |||||||
UniProt_GCRP | UniProtAcc | H2KYB8 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | grld | ||||||
Allele (63) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00021507 | ||||||
00021508 | |||||||
00021509 | |||||||
00021510 | |||||||
00123207 | |||||||
00123208 | |||||||
Contained_in_operon | CEOP4004 | ||||||
Ortholog (37) | |||||||
Paralog | WBGene00007016 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00008549 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00017778 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00021901 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Concise_description | grld-1 is orthologous to human RBM15 (OMIM:606077, mutated in infantile acute megakaryoblastic leukemia) and Drosophila NITO; GRLD-1 encodes a paralog of DIN-1; like DIN-1, it has N-terminal RNA recognition motifs (RRMs) and a C-terminal SID/RD (SMRT interaction domain/repressor) domain. | Paper_evidence | WBPaper00024451 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson1823 | |||||||
WBPerson567 | |||||||
Date_last_updated | 19 Nov 2010 00:00:00 | ||||||
Automated_description | Predicted to enable RNA binding activity. Located in nucleus. Expressed in epithelial cell; lateral ganglion; muscle cell; and neurons. Is an ortholog of human RBM15 (RNA binding motif protein 15) and RBM15B (RNA binding motif protein 15B). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F29C4.7a | |||||
F29C4.7b | |||||||
Corresponding_CDS_history | F29C4.7c:wp261 | ||||||
Corresponding_transcript | F29C4.7a.1 | ||||||
F29C4.7b.1 | |||||||
Other_sequence (55) | |||||||
Associated_feature | WBsf651605 | ||||||
WBsf667693 | |||||||
WBsf995065 | |||||||
WBsf995066 | |||||||
WBsf995067 | |||||||
WBsf1016486 | |||||||
WBsf1016487 | |||||||
WBsf1016488 | |||||||
WBsf229648 | |||||||
Experimental_info | RNAi_result | WBRNAi00045919 | Inferred_automatically | RNAi_primary | |||
WBRNAi00110316 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00085121 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014106 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00062227 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031573 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr9156 | ||||||
Expr9157 | |||||||
Expr1012379 | |||||||
Expr1037712 | |||||||
Expr1149820 | |||||||
Expr2012275 | |||||||
Expr2030511 | |||||||
Drives_construct | WBCnstr00013753 | ||||||
Construct_product | WBCnstr00013753 | ||||||
WBCnstr00013754 | |||||||
Microarray_results (33) | |||||||
Expression_cluster (103) | |||||||
Interaction (19) | |||||||
Map_info | Map | IV | Position | -26.9369 | Error | 0.011271 | |
Positive | Positive_clone | F29C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031800 | ||||||
WBPaper00037743 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |