WormBase Tree Display for Gene: WBGene00018446
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| WBGene00018446 | SMap | S_parent | Sequence | F45C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-83 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F45C12.15 | ||||||||
| Molecular_name | F45C12.15 | ||||||||
| F45C12.15.1 | |||||||||
| CE10464 | |||||||||
| F45C12.15.2 | |||||||||
| Other_name | CELE_F45C12.15 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ceh-83 | ||||||||
| DB_info | Database | AceView | gene | 2C24 | |||||
| WormQTL | gene | WBGene00018446 | |||||||
| WormFlux | gene | WBGene00018446 | |||||||
| NDB | locus_tag | CELE_F45C12.15 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018446|UniProtKB=O16749 | |||||||
| family | PTHR24391 | ||||||||
| NCBI | gene | 173541 | |||||||
| RefSeq | protein | NM_001383789.2 | |||||||
| TREEFAM | TREEFAM_ID | TF343180 | |||||||
| TrEMBL | UniProtAcc | O16749 | |||||||
| UniProt_GCRP | UniProtAcc | O16749 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-83 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (55) | |||||||||
| Strain | WBStrain00049280 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00028538 | ||||||||
| 00028539 | |||||||||
| 00028540 | |||||||||
| 00028541 | |||||||||
| 00028542 | |||||||||
| 00028543 | |||||||||
| 00028544 | |||||||||
| 00028545 | |||||||||
| 00123584 | |||||||||
| 00123585 | |||||||||
| Ortholog | chrII_pilon.g3454 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00264573 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00289126 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00000462 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006970 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009553 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012584 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044032 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | ceh-83 is a divergent homeobox gene; it encodes 5 homeodomains; most homeodomain proteins bind DNA and are transcription factors; ceh-83 lies on chromosome II in a repetitive region, where several other divergent homeobox genes lie; ceh-83 is expressed in the hypodermis, intestine, and the vulva. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00029055 | |||||||||
| WBPaper00044760 | |||||||||
| WBPaper00045521 | |||||||||
| WBPaper00048690 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 19 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in hypodermis; intestine; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F45C12.15 | |||||||
| Corresponding_transcript | F45C12.15.1 | ||||||||
| F45C12.15.2 | |||||||||
| Associated_feature | WBsf649887 | ||||||||
| WBsf665362 | |||||||||
| WBsf978738 | |||||||||
| WBsf986794 | |||||||||
| Transcription_factor | WBTranscriptionFactor000265 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00047355 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014982 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7562 | ||||||||
| Expr15609 | |||||||||
| Expr1027107 | |||||||||
| Expr1037951 | |||||||||
| Expr1151208 | |||||||||
| Expr1170056 | |||||||||
| Expr2009908 | |||||||||
| Expr2028148 | |||||||||
| Drives_construct | WBCnstr00012707 | ||||||||
| WBCnstr00026507 | |||||||||
| WBCnstr00042441 | |||||||||
| Construct_product | WBCnstr00026507 | ||||||||
| WBCnstr00038853 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction | WBInteraction000232372 | ||||||||
| WBInteraction000329571 | |||||||||
| WBInteraction000393851 | |||||||||
| WBInteraction000526039 | |||||||||
| Map_info | Map | II | Position | -14.5192 | Error | 0.001167 | |||
| Positive | Positive_clone | F45C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
