WormBase Tree Display for Gene: WBGene00020821

WBGene00020821 SMap: S_parent: Sequence: T26A5
  Identity: Version: 2
    Name: CGC_name: jhdm-1 Person_evidence: WBPerson338
      Sequence_name: T26A5.5
      Molecular_name: T26A5.5a
        T26A5.5a.1
        CE50209
        T26A5.5b
        CE50262
        T26A5.5c
        CE50145
        T26A5.5b.1
        T26A5.5c.1
      Other_name: CELE_T26A5.5 Accession_evidence: NDB BX284603
      Public_name: jhdm-1
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 25 Sep 2012 09:30:16 WBPerson2970 Name_change: CGC_name: jhdm-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: jhdm
    Allele (81)
    Strain: WBStrain00002838
      WBStrain00032517
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP3388
    Ortholog (43)
    Paralog: WBGene00005013 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017920 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable histone demethylase activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; lung non-small cell carcinoma; and pancreatic ductal carcinoma. Is an ortholog of human KDM2B (lysine demethylase 2B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9952 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:13610)
      DOID:3587 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:13610)
      DOID:3908 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:13606)
  Molecular_info: Corresponding_CDS: T26A5.5a
      T26A5.5b
      T26A5.5c
    Corresponding_CDS_history: T26A5.5a:wp88
      T26A5.5a:wp245
      T26A5.5b:wp88
      T26A5.5b:wp245
    Corresponding_transcript: T26A5.5a.1
      T26A5.5b.1
      T26A5.5c.1
    Other_sequence (18)
    Associated_feature (15)
  Experimental_info: RNAi_result: WBRNAi00054167 Inferred_automatically: RNAi_primary
      WBRNAi00007358 Inferred_automatically: RNAi_primary
      WBRNAi00007660 Inferred_automatically: RNAi_primary
      WBRNAi00035980 Inferred_automatically: RNAi_primary
      WBRNAi00087727 Inferred_automatically: RNAi_primary
      WBRNAi00019240 Inferred_automatically: RNAi_primary
      WBRNAi00064106 Inferred_automatically: RNAi_primary
      WBRNAi00091523 Inferred_automatically: RNAi_primary
      WBRNAi00005484 Inferred_automatically: RNAi_primary
      WBRNAi00001278 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram941
      Expr6772
      Expr1028477
      Expr1039070
      Expr1157713
      Expr2012882
      Expr2031116
    Drives_construct: WBCnstr00003360
      WBCnstr00024861
    Construct_product: WBCnstr00024861
    Microarray_results (31)
    Expression_cluster (145)
    SAGE_tag: SAGE:tcgagcgaacggcgaag Strand: Sense
        Unambiguously_mapped
      SAGE:acgatgggca Strand: Sense
        Unambiguously_mapped
      SAGE:agcagctctg Strand: Antisense
      SAGE:tcgagcgaac Strand: Sense
        Unambiguously_mapped
      SAGE:gtggatcgag Strand: Antisense
      SAGE:gaaaccggtg Strand: Sense
        Unambiguously_mapped
      SAGE:gaggaggatc Strand: Sense
        Unambiguously_mapped
      SAGE:gaaaccggtgaatatga Strand: Sense
        Unambiguously_mapped
      SAGE:acgatgggcacaagcac Strand: Sense
        Unambiguously_mapped
      SAGE:gaggaggatcgagcaaa Strand: Sense
        Unambiguously_mapped
    Interaction (29)
  Map_info: Map: III Position: -1.25689
    Positive: Positive_clone: T26A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (14)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene