WormBase Tree Display for Gene: WBGene00021892
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| WBGene00021892 | SMap | S_parent | Sequence | Y54G2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | Y54G2A.28 | |||||||
| Molecular_name | Y54G2A.28a | ||||||||
| Y54G2A.28a.1 | |||||||||
| CE47680 | |||||||||
| Y54G2A.28b | |||||||||
| CE48863 | |||||||||
| Y54G2A.28c | |||||||||
| CE49032 | |||||||||
| Y54G2A.28b.1 | |||||||||
| Y54G2A.28c.1 | |||||||||
| Other_name | Y54G2A.c | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y54G2A.28 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | Y54G2A.28 | ||||||||
| DB_info | Database | AceView | gene | 4D766 | |||||
| WormQTL | gene | WBGene00021892 | |||||||
| WormFlux | gene | WBGene00021892 | |||||||
| NDB | locus_tag | CELE_Y54G2A.28 | |||||||
| NCBI | gene | 190285 | |||||||
| RefSeq | protein | NM_001307331.2 | |||||||
| NM_067878.5 | |||||||||
| NM_001380123.1 | |||||||||
| TrEMBL | UniProtAcc | U4PAN2 | |||||||
| U4PB19 | |||||||||
| E5TZU5 | |||||||||
| UniProt_GCRP | UniProtAcc | U4PAN2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Apr 2012 09:04:06 | WBPerson1849 | Event | Split_into | WBGene00219425 | ||||
| Split_into | WBGene00219425 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (55) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00144202 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00026233 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00075467 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00084140 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| Cni-Y54G2A.28 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| FL83_04788 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_014324 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g9900 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in OLL; PVD; germline precursor cell; intestine; and tail hypodermis based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; daf-12; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by five chemicals including rotenone; Rifampin; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54G2A.28a | |||||||
| Y54G2A.28b | |||||||||
| Y54G2A.28c | |||||||||
| Corresponding_CDS_history | Y54G2A.28:wp124 | ||||||||
| Y54G2A.28:wp222 | |||||||||
| Y54G2A.28:wp231 | |||||||||
| Corresponding_transcript | Y54G2A.28a.1 | ||||||||
| Y54G2A.28b.1 | |||||||||
| Y54G2A.28c.1 | |||||||||
| Other_sequence | JI470803.1 | ||||||||
| Experimental_info | Expr_pattern | Expr1015944 | |||||||
| Expr1160892 | |||||||||
| Expr2007941 | |||||||||
| Expr2026184 | |||||||||
| Microarray_results | Aff_Y94H6A_144.A | ||||||||
| GPL14144_Y54G2A.28_240-299_0.892_13_A | |||||||||
| GPL19516_CGZ0049186 | |||||||||
| GPL19516_CGZ0049187 | |||||||||
| GPL19516_CGZ0049188 | |||||||||
| GPL21109_Y54G2A.28a | |||||||||
| GPL21109_Y54G2A.28c | |||||||||
| GPL8673_Y54G2A_28P00066 | |||||||||
| Expression_cluster (68) | |||||||||
| Map_info | Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -6.65784 | |||||||
| Method | Gene |
