WormBase Tree Display for Gene: WBGene00022554
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| WBGene00022554 | SMap | S_parent | Sequence | ZC204 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | duxl-1 | |||||||
| Sequence_name | ZC204.2 | ||||||||
| Molecular_name | ZC204.2 | ||||||||
| ZC204.2.1 | |||||||||
| CE15086 | |||||||||
| Other_name | ceh-80 | Person_evidence | WBPerson83 | ||||||
| dux-1 | Person_evidence | WBPerson460 | |||||||
| CELE_ZC204.2 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | duxl-1 | ||||||||
| DB_info | Database | AceView | gene | 2B955 | |||||
| WormQTL | gene | WBGene00022554 | |||||||
| WormFlux | gene | WBGene00022554 | |||||||
| NDB | locus_tag | CELE_ZC204.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022554|UniProtKB=P91547 | |||||||
| family | PTHR24339 | ||||||||
| NCBI | gene | 173537 | |||||||
| RefSeq | protein | NM_061631.5 | |||||||
| TREEFAM | TREEFAM_ID | TF340750 | |||||||
| TrEMBL | UniProtAcc | P91547 | |||||||
| UniProt_GCRP | UniProtAcc | P91547 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 24 Mar 2011 09:45:14 | WBPerson2970 | Name_change | CGC_name | dux-1 | ||||
| 3 | 30 Sep 2011 14:32:15 | WBPerson2970 | Name_change | Other_name | ceh-80 | ||||
| 4 | 14 Oct 2011 15:18:51 | WBPerson2970 | Name_change | CGC_name | duxl-1 | ||||
| Other_name | dux-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | duxl | ||||||||
| Allele (139) | |||||||||
| Strain | WBStrain00030077 | ||||||||
| WBStrain00049283 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00051266 | ||||||||
| 00051267 | |||||||||
| 00051268 | |||||||||
| 00051269 | |||||||||
| 00051270 | |||||||||
| 00051271 | |||||||||
| 00051272 | |||||||||
| 00051273 | |||||||||
| 00051274 | |||||||||
| 00126612 | |||||||||
| Ortholog | chrII_pilon.g3424 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Paralog | WBGene00000429 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00000430 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00000432 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012584 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018022 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018433 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044032 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | duxl-1 is a divergent homeobox gene; it encodes three homeodomains, two of which are likely to have arisen as internal tandem duplication; duxl-1 is expressed in the gonad, hypodermis, coelomocyte, intestine, germ line, and the excretory cell. | Paper_evidence | WBPaper00046864 | |||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 18 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in coelomocyte; excretory cell; gonad; and spermatheca. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC204.2 | |||||||
| Corresponding_transcript | ZC204.2.1 | ||||||||
| Associated_feature | WBsf643977 | ||||||||
| WBsf978462 | |||||||||
| WBsf986762 | |||||||||
| WBsf1011600 | |||||||||
| WBsf220858 | |||||||||
| Transcription_factor | WBTranscriptionFactor001115 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00037983 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021609 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107198 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058785 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00003855 | ||||||||
| WBCnstr00012894 | |||||||||
| WBCnstr00024162 | |||||||||
| WBCnstr00042444 | |||||||||
| Construct_product | WBCnstr00016847 | ||||||||
| WBCnstr00024162 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (178) | |||||||||
| Interaction | WBInteraction000340389 | ||||||||
| WBInteraction000348496 | |||||||||
| WBInteraction000420196 | |||||||||
| WBInteraction000535128 | |||||||||
| Map_info | Map | II | Position | -14.7176 | Error | 0.021375 | |||
| Positive | Positive_clone | ZC204 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
