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WormBase Tree Display for Gene: WBGene00027364

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Name Class

WBGene00027364SMapS_parentSequencecb25.fpc0090
IdentityVersion1
NameCGC_nameCbr-prp-9From_analysisInferred_from_orthology
Sequence_nameCBG04748
Molecular_nameCBG04748
CBG04748.1
CBP01257
Other_nameCBG_04748Accession_evidenceNDBHE601135
Public_nameCBG04748
DB_infoDatabaseNDBlocus_tagCBG_04748
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
228 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCbr-prp-9
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classprp
RNASeq_FPKMWBls:000000224.77From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
49.1697From_analysisRNASeq.briggsae.WBls:0000002.control_mean
51.3383From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
71.4008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
48.6876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
49.0492From_analysisRNASeq.briggsae.WBls:0000002.control_mean
50.013From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003176.76From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
206.115From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
235.471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
174.475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
195.569From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004100.618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
101.892From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
103.166From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
102.733From_analysisRNASeq.briggsae.WBls:0000004.control_mean
114.3From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
97.2393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
98.342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002710.5005From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.3912From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.55082From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
36.1224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
20.589From_analysisRNASeq.briggsae.WBls:0000027.control_mean
21.8414From_analysisRNASeq.briggsae.WBls:0000027.control_median
33.1822From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003539.6795From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003820.1285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
40.6337From_analysisRNASeq.briggsae.WBls:0000038.control_mean
40.8303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
42.6628From_analysisRNASeq.briggsae.WBls:0000038.control_median
44.4954From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
57.0807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041104.628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
105.872From_analysisRNASeq.briggsae.WBls:0000041.control_median
107.116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
109.399From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
64.3332From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
96.369From_analysisRNASeq.briggsae.WBls:0000041.control_mean
78.5549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
79.9382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
90.6616From_analysisRNASeq.briggsae.WBls:0000041.control_mean
92.2831From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
35.2086From_analysisRNASeq.briggsae.WBls:0000063.control_mean
39.5664From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
42.3125From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
44.2172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
49.9467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
38.9558From_analysisRNASeq.briggsae.WBls:0000063.control_mean
43.2649From_analysisRNASeq.briggsae.WBls:0000063.control_median
57.6918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010142.3125From_analysisRNASeq.briggsae.total_over_all_stages.control_median
58.9626From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
49.3172From_analysisRNASeq.briggsae.total_over_all_stages.control_median
65.5875From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130930
00130931
00130932
Contained_in_operonCBOPA0631
Ortholog (32)
ParalogWBGene00032626Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is an ortholog of C. elegans prp-9.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04748
Corresponding_CDS_historyCBG04748:bp194
Corresponding_transcriptCBG04748.1
Other_sequence (63)
Experimental_infoExpr_patternExpr1053380
Microarray_resultsGPL8303_CB6_WBGene00027364_A
GPL14143_CBG04748_1333-1392_0.946_2_C
GPL14143_CBG04748_1396-1455_0.959_1_A
GPL14143_CBG04748_1442-1501_0.721_187_B
MethodGene