WormBase Tree Display for Gene: WBGene00029473

WBGene00029473 SMap: S_parent: Sequence: cb25.fpc0829
  Identity: Version: 2
    Name: CGC_name: Cbr-unc-84 From_analysis: Inferred_from_orthology
      Sequence_name: CBG07416
      Molecular_name: CBG07416
        CBG07416.1
        CBP07622
      Other_name: CBG_07416 Accession_evidence: NDB HE601041
      Public_name: Cbr-unc-84
    DB_info: Database: NDB locus_tag CBG_07416
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:59 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:05 WBPerson2970 Name_change: CGC_name: Cbr-unc-84
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    Allele: WBVar01473712
      WBVar00112297
      WBVar00112291
      WBVar00045779
      WBVar00112298
      WBVar00112292
      WBVar00045794
      WBVar00112293
      WBVar00112299
      WBVar00112294
      WBVar00045784
      WBVar00112300
      WBVar00045769
      WBVar00112295
      WBVar00112301
      WBVar00112296
      WBVar00045789
      WBVar00112290
      WBVar00045774
    RNASeq_FPKM: WBls:0000002 10.9084 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        13.4369 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        9.32209 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        9.96632 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        10.4278 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        8.98587 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        9.64421 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 45.3151 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        49.9153 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        54.5155 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        42.9198 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        47.5835 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 60.8257 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        61.9059 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        62.9862 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        63.7132 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        64.9743 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        65.5625 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        71.784 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 10.6173 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        18.4682 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        23.0309 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        23.8077 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        24.1933 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        24.579 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        25.2688 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        6.89267 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        7.12638 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        6.05427 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        7.8706 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        9.03369 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 10.1845 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        21.4572 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.31848 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        6.7777 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        10.7012 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        12.2513 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        9.5145 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 16.0729 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 13.1362 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        6.28809 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        8.63829 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        9.17641 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        9.44428 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        9.71453 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 4.61488 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        7.61043 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        7.71747 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        8.34457 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        8.97168 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        9.1377 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        3.97619 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        5.21555 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        6.46651 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        6.60558 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        3.09766 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        3.42839 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        3.64959 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        3.8426 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        4.56772 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        3.74609 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        3.76168 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        7.08179 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 16.5112 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        9.32209 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        20.0083 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        9.51831 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    Ortholog: WBGene00006816 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00065276 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153879 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00126327 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00098767 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g3838 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13620 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7890 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g5234 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g13726 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11587 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10852 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g24142 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17507 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00160.g5910 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-unc-84 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g22061 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01402.g20703 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01596 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_025735 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00461 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12920 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0124920 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00224599 Brugia malayi From_analysis: WormBase-Compara
      chrX_pilon.g20442 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239905 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263514 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00264258 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00295961 Trichuris muris From_analysis: WormBase-Compara
      WBGene00299947 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00027077 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027078 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027079 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027133 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036735 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037278 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037287 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037288 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042753 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270350 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270561 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Galactose-binding-like domain superfamily; Sad1 / UNC-like C-terminal; and SUN domain. Is an ortholog of C. elegans unc-84. In C. elegans, unc-84 is involved in several processes, including egg-laying behavior; nuclear migration along microtubule; and vulval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG07416
    Corresponding_CDS_history: CBG07416:bp194
    Corresponding_transcript: CBG07416.1
    Other_sequence: CRC01477_1
      Tcir_isotig11905
      JI164978.1
      CR09602
      CJC07355_1
      EY472571.1
      Acan_isotig03055
      CRC02616_1
      ES410932.1
      CR07327
      CRC00167_1
      HBC18196_1
      CJC03650_1
      Acan_isotig03057
      Dviv_isotig16193
      Dviv_isotig16192
      FC548041.1
      Oden_isotig18636
      Hbac_isotig06197
      EX535927.1
      ACC24711_1
      CR09601
      FC555286.1
      Acan_isotig03056
      ACC05768_1
  Experimental_info: Expr_pattern: Expr1066689
    Microarray_results: GPL8303_CB6_WBGene00029473_A
      GPL8303_CB6_WBGene00029473_B
      GPL14143_CBG07416_2599-2658_0.818_1_C
      GPL14143_CBG07416_2804-2863_0.794_20_A
      GPL14143_CBG07416_3044-3103_0.791_26_B
  Reference: WBPaper00041660
  Method: Gene