WormBase Tree Display for Variation: WBVar00112290

WBVar00112290 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00112290
    Other_name: cbs47811
    HGVSg: chrX:g.19316622A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0829
    Flanking_sequences: ccttcggagcactggaccgatttccttctggagcaacttcttttccaatg gttcgtagctaatactggatacatcaatgaaatgcgacagctctactgca
    Mapping_target: cb25.fpc0829
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 315 288 101 90 82 70 22 20 12
        CAC HindI 127 120 82 81 60 58 45 43 41 39 38 30 27 26 24 20 18 17 16 12 12 12 10 9 9 7 6 4 3 2 2
        GANTC HinfI 381 337 241 41
        AATT Sse9I, TasI, Tsp509I, TspEI 315 197 82 70 59 58 54 42 36 33 22 20 12
        GAWTC TfiI 381 337 241 41
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 315 288 101 90 82 70 23 19 12
        CAC HindI 127 120 99 82 81 60 45 43 39 38 30 27 26 24 20 18 17 16 12 12 12 10 9 9 7 6 4 3 2 2
        GANTC HinfI 337 277 241 104 41
        AATT Sse9I, TasI, Tsp509I, TspEI 315 197 82 70 59 58 54 42 36 33 23 19 12
        GAWTC TfiI 337 277 241 104 41
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00029473
    Transcript: CBG07416.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG07416.1:c.3074A>C
        HGVSp: CBP07622.1:p.His1025Pro
        cDNA_position: 3080
        CDS_position: 3074
        Protein_position: 1025
        Exon_number: 10/12
        Codon_change: cAc/cCc
        Amino_acid_change: H/P
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP