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WormBase Tree Display for Gene: WBGene00031404

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Name Class

WBGene00031404SMapS_parentSequencecb25.fpc2234
IdentityVersion2
NameCGC_nameCbr-bbs-4From_analysisInferred_from_orthology
Sequence_nameCBG09893
Molecular_nameCBG09893a
CBG09893a.1
CBP16671
CBG09893b
CBP42657
CBG09893b.1
Other_nameCBG_09893Accession_evidenceNDBHE601459
Public_nameCbr-bbs-4
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-bbs-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbbs
RNASeq_FPKMWBls:00000020.642992From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.761467From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.79895From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.84246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.454748From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.684788From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.720971From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.68425From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.3685From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.387911From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.58547From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000042.92507From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.67231From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.41955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
4.32452From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.52882From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
4.58108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
5.16807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.099862From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.24002From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.62021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.896556From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.35333From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.69325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.19937From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.662026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.08827From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.36104From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.51451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.26764From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.061509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.12884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.182111From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.235381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.293609From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.748705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.492043From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.563535From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.911873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1.2949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.103036From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.252196From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.285257From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.525091From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.545962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.195185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.22369From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.270245From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.662026From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.22735From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.773827From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.44234From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Contained_in_operonCBOPA0822
Ortholog (34)
ParalogWBGene00031514Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00025160Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030448Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032126Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035509Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036497Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038300Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00088056Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Bardet-Biedl syndrome 4 protein; Tetratricopeptide-like helical domain superfamily; and Tetratricopeptide repeat. Is an ortholog of C. elegans bbs-4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09893a
CBG09893b
Corresponding_CDS_historyCBG09893:bp194
Corresponding_transcriptCBG09893a.1
CBG09893b.1
Experimental_infoExpr_patternExpr1068728
Microarray_resultsGPL8303_CB6_WBGene00031404_A
GPL8303_CB6_WBGene00031404_B
GPL14143_CBG09893_1013-1072_0.916_14_C
GPL14143_CBG09893_1098-1157_0.893_27_A
GPL14143_CBG09893_1299-1358_0.905_22_B
MethodGene