WormBase Tree Display for Gene: WBGene00033775

WBGene00033775 SMap: S_parent: Sequence: cb25.fpc2888b2
  Identity: Version: 2
    Name: CGC_name: Cbr-cdkr-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG12909
      Molecular_name: CBG12909
        CBG12909.1
        CBP09196
      Other_name: CBG_12909 Accession_evidence: NDB HE600927
      Public_name: Cbr-cdkr-3
    DB_info: Database: NDB locus_tag CBG_12909
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:03 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 04 Jun 2013 14:58:47 WBPerson2970 Name_change: CGC_name: Cbr-cdkr-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdkr
    RNASeq_FPKM: WBls:0000002 27.0111 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        28.8093 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        28.8731 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        30.5437 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        23.6599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        27.5219 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        27.9421 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 39.8527 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        41.1841 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        42.5155 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        41.5675 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        42.3344 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 31.2287 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        34.3563 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        37.484 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        29.3759 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        34.1213 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        36.1397 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        36.3784 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 12.6709 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        15.3752 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        17.0169 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        19.4017 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        21.7865 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        22.8404 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        30.9332 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        39.8872 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        6.27784 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        10.3676 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        21.0226 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        9.68369 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 0.723435 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        10.2443 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        25.8088 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        4.20067 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        11.2213 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        14.1525 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        9.17659 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 23.848 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 13.9745 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        17.6746 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        20.5346 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        21.3747 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        41.0608 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        5.72824 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 41.7089 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        57.2713 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        59.9415 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        60.2489 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        60.5562 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        66.8785 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        53.1679 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        56.5798 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        57.2258 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        58.5836 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 17.4113 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        17.9999 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        19.5436 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        23.5555 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        25.9574 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        19.0844 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        21.5495 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        27.4498 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 25.8088 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        26.9562 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        27.2304 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        28.9899 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog: WBGene00013765 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00063600 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00123696 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00145502 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00103546 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g212 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4010 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2349 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7288 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1177 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2261 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6757 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11240 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20760 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3810 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00029.g1692 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cdkr-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14646 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02899.g28313 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19605 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_022011 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05184 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10952 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g19447 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50429000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00231409 Brugia malayi From_analysis: WormBase-Compara
      chrV_pilon.g18055 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243945 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288670 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domain: CDK5 regulatory subunit-associated protein 3. Is an ortholog of C. elegans cdkr-3. In C. elegans, cdkr-3 is involved in IRE1-mediated unfolded protein response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG12909
    Corresponding_CDS_history: CBG12909:bp194
    Corresponding_transcript: CBG12909.1
    Other_sequence: Oden_isotig09016
      Oden_isotig09018
      Tcol_isotig12238
      Oden_isotig09019
      ACC13565_1
      TS02670
      Dviv_isotig23268
      EX559208.1
      TSC01607_1
      JI174691.1
      JI244036.1
      EX555340.1
      CRC06531_1
      Hbac_isotig01497
      PPC08706_1
      Tcir_isotig27352
      Oden_isotig09017
      CR07719
      CBC06938_1
  Experimental_info: Expr_pattern: Expr1065220
    Microarray_results: GPL8303_CB6_WBGene00033775_A
      GPL8303_CB6_WBGene00033775_B
      GPL14143_CBG12909_697-756_0.871_37_C
      GPL14143_CBG12909_911-970_0.916_14_B
      GPL14143_CBG12909_1141-1200_0.934_6_A
  Method: Gene