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WormBase Tree Display for Gene: WBGene00034399

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Name Class

WBGene00034399SMapS_parentSequencecb25.fpc3752a
IdentityVersion2
NameCGC_nameCbr-rho-1From_analysisInferred_from_orthology
Sequence_nameCBG13664
Molecular_nameCBG13664
CBG13664.1
CBP09433
Other_nameCBG_13664Accession_evidenceNDBHE600943
Public_nameCbr-rho-1
DB_infoDatabaseNDBlocus_tagCBG_13664
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rho-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrho
AlleleWBVar00120227
WBVar00120228
RNASeq_FPKMWBls:0000002154.882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
173.445From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
218.116From_analysisRNASeq.briggsae.WBls:0000002.control_mean
326.021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
188.62From_analysisRNASeq.briggsae.WBls:0000002.control_median
203.796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
214.536From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003375.023From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
449.624From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
524.225From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
452.013From_analysisRNASeq.briggsae.WBls:0000003.control_mean
456.79From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004694.65From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
701.987From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
709.323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
716.076From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
749.436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
754.463From_analysisRNASeq.briggsae.WBls:0000004.control_mean
902.83From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027119.692From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
191.776From_analysisRNASeq.briggsae.WBls:0000027.control_mean
410.083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
45.5521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
171.549From_analysisRNASeq.briggsae.WBls:0000027.control_median
199.683From_analysisRNASeq.briggsae.WBls:0000027.control_mean
223.406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035207.889From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038133.683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
191.043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
210.387From_analysisRNASeq.briggsae.WBls:0000038.control_mean
213.286From_analysisRNASeq.briggsae.WBls:0000038.control_median
235.528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
281.292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041163.969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
168.442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
173.563From_analysisRNASeq.briggsae.WBls:0000041.control_median
176.788From_analysisRNASeq.briggsae.WBls:0000041.control_mean
178.684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
196.059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
159.565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
173.459From_analysisRNASeq.briggsae.WBls:0000041.control_median
174.199From_analysisRNASeq.briggsae.WBls:0000041.control_mean
178.476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063217.453From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
223.539From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
229.79From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
230.916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
277.055From_analysisRNASeq.briggsae.WBls:0000063.control_mean
483.576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
168.496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
226.665From_analysisRNASeq.briggsae.WBls:0000063.control_median
258.962From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101223.539From_analysisRNASeq.briggsae.total_over_all_stages.control_median
269.831From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
223.473From_analysisRNASeq.briggsae.total_over_all_stages.control_median
304.842From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137922
00137923
Ortholog (34)
ParalogWBGene00024928Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031162Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031164Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033857Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034424Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035383Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036972Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable GTP binding activity and GTPase activity. Is an ortholog of C. elegans rho-1. In C. elegans, rho-1 is involved in several processes, including actomyosin structure organization; positive regulation of acetylcholine secretion, neurotransmission; and positive regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13664
Corresponding_CDS_historyCBG13664:bp194
Corresponding_transcriptCBG13664.1
Other_sequence (190)
Experimental_infoExpr_patternExpr1067832
Microarray_resultsGPL8303_CB6_WBGene00034399_A
GPL8303_CB6_WBGene00034399_B
GPL14143_CBG13664_302-361_0.728_5_C
GPL14143_CBG13664_311-370_0.779_1_B
GPL14143_CBG13664_400-459_0.769_3_A
MethodGene