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WormBase Tree Display for Gene: WBGene00035319

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Name Class

WBGene00035319SMapS_parentSequencecb25.fpc3857b
IdentityVersion2
NameCGC_nameCbr-crn-1From_analysisInferred_from_orthology
Sequence_nameCBG14945
Molecular_nameCBG14945
CBG14945.1
CBP09777
Other_nameCBG_14945Accession_evidenceNDBHE600904
Public_nameCbr-crn-1
DB_infoDatabaseNDBlocus_tagCBG_14945
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-crn-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcrn
RNASeq_FPKMWBls:000000267.5629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
68.4863From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
73.0385From_analysisRNASeq.briggsae.WBls:0000002.control_mean
83.0664From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
75.7764From_analysisRNASeq.briggsae.WBls:0000002.control_median
78.488From_analysisRNASeq.briggsae.WBls:0000002.control_mean
94.8365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003216.204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
231.067From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
245.93From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
179.388From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
213.841From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004109.042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
111.088From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
113.134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
100.263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
106.901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
107.489From_analysisRNASeq.briggsae.WBls:0000004.control_mean
108.103From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.2634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
18.2907From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.4641From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.3394From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.1587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.3114From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.04422From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003515.1222From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003818.5466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
19.8896From_analysisRNASeq.briggsae.WBls:0000038.control_mean
21.9611From_analysisRNASeq.briggsae.WBls:0000038.control_median
25.3756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
29.2772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.35913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041131.109From_analysisRNASeq.briggsae.WBls:0000041.control_mean
153.945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
155.613From_analysisRNASeq.briggsae.WBls:0000041.control_median
157.282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
171.122From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
42.0867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
110.279From_analysisRNASeq.briggsae.WBls:0000041.control_mean
112.325From_analysisRNASeq.briggsae.WBls:0000041.control_median
66.5359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
70.7051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:0000063102.195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
51.1911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
55.286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
61.754From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
64.1406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
66.9133From_analysisRNASeq.briggsae.WBls:0000063.control_mean
62.9473From_analysisRNASeq.briggsae.WBls:0000063.control_median
67.8122From_analysisRNASeq.briggsae.WBls:0000063.control_mean
72.3064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010151.1911From_analysisRNASeq.briggsae.total_over_all_stages.control_median
67.415From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
65.3382From_analysisRNASeq.briggsae.total_over_all_stages.control_median
72.8483From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00138789
00138790
00138791
00138792
Ortholog (34)
ParalogWBGene00033574Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037095Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040054Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and nuclease activity. Is an ortholog of C. elegans crn-1. In C. elegans, crn-1 is involved in apoptotic DNA fragmentation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14945
Corresponding_CDS_historyCBG14945:bp194
Corresponding_transcriptCBG14945.1
Other_sequence (46)
Experimental_infoExpr_patternExpr1068592
Microarray_resultsGPL8303_CB6_WBGene00035319_A
GPL8303_CB6_WBGene00035319_B
GPL14143_CBG14945_299-358_0.789_120_B
GPL14143_CBG14945_409-468_0.905_18_A
GPL14143_CBG14945_500-559_0.917_12_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene