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WormBase Tree Display for Gene: WBGene00035843

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Name Class

WBGene00035843SMapS_parentSequencecb25.fpc4030a2
IdentityVersion2
NameCGC_nameCbr-pes-4From_analysisInferred_from_orthology
Sequence_nameCBG15694
Molecular_nameCBG15694
CBG15694.1
CBP40215
Other_nameCBG_15694Accession_evidenceNDBHE600979
Public_nameCbr-pes-4
DB_infoDatabaseNDBlocus_tagCBG_15694
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-pes-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpes
RNASeq_FPKMWBls:000000220.1402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
21.9579From_analysisRNASeq.briggsae.WBls:0000002.control_mean
22.6643From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
23.0693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.6298From_analysisRNASeq.briggsae.WBls:0000002.control_mean
21.4023From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.6455From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000310.7702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
8.8025From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
9.78635From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
9.81822From_analysisRNASeq.briggsae.WBls:0000003.control_mean
9.88195From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000472.9108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
75.9116From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
78.9123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
72.4894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
72.8919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
73.9927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
74.2394From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:000002712.0517From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.8892From_analysisRNASeq.briggsae.WBls:0000027.control_mean
28.4352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.18061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
20.2435From_analysisRNASeq.briggsae.WBls:0000027.control_median
22.9893From_analysisRNASeq.briggsae.WBls:0000027.control_mean
47.2896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003530.6071From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.0119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
22.3773From_analysisRNASeq.briggsae.WBls:0000038.control_median
26.6978From_analysisRNASeq.briggsae.WBls:0000038.control_mean
28.7427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
52.5921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
9.4443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004111.4671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.98631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.67115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.01191From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.35266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.36931From_analysisRNASeq.briggsae.WBls:0000041.control_mean
10.1703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
6.74678From_analysisRNASeq.briggsae.WBls:0000041.control_median
7.29807From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.14089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006311.5188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
12.5436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
13.3811From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
13.9526From_analysisRNASeq.briggsae.WBls:0000063.control_mean
15.3578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
16.9615From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
12.9623From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.9935From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.19843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010116.0119From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.548From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
15.6848From_analysisRNASeq.briggsae.total_over_all_stages.control_median
25.4103From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00139270
00139271
Ortholog (30)
ParalogWBGene00028003Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031125Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033516Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036033Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036432Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036433Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037540Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Is an ortholog of C. elegans pes-4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG15694
Corresponding_CDS_historyCBG15694:bp194
CBG15694:bp255
Corresponding_transcriptCBG15694.1
Other_sequence (63)
Experimental_infoExpr_patternExpr1056950
Microarray_resultsGPL8303_CB6_WBGene00035843_A
GPL8303_CB6_WBGene00035843_B
GPL8303_CB6_WBGene00035843_C
GPL8303_CB6_WBGene00035843_D
GPL8303_CB6_WBGene00035843_E
GPL14143_CBG15694_429-488_0.906_11_C
GPL14143_CBG15694_852-911_0.665_110_B
GPL14143_CBG15694_932-991_0.944_2_A
MethodGene