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WormBase Tree Display for Gene: WBGene00036653

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Name Class

WBGene00036653SMapS_parentSequencecb25.fpc4044c
IdentityVersion3
NameSequence_nameCBG16820
Molecular_nameCBG16820
CBG16820.1
CBP42573
Other_nameCBG_16820Accession_evidenceNDBHE600944
Public_nameCBG16820
DB_infoDatabaseNDBlocus_tagCBG_16820
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
201 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameCbr-ppgn-1
327 Nov 2019 12:48:15WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00124334
WBVar00124335
WBVar00124336
WBVar00124337
RNASeq_FPKMWBls:000000229.5245From_analysisRNASeq.briggsae.WBls:0000002.control_mean
37.1069From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
42.0391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.42753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
20.7299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
27.3259From_analysisRNASeq.briggsae.WBls:0000002.control_mean
28.9184From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000342.0608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
44.9537From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
47.8466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
43.3178From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
44.4084From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000420.2761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
21.3106From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
22.3451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
18.7291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
19.4485From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
20.6037From_analysisRNASeq.briggsae.WBls:0000004.control_mean
22.2197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.6943From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.1831From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
26.1505From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.74931From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.4499From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.5873From_analysisRNASeq.briggsae.WBls:0000027.control_mean
31.2662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003546.4097From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.9001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
32.3353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
32.5724From_analysisRNASeq.briggsae.WBls:0000038.control_median
32.8096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
35.96From_analysisRNASeq.briggsae.WBls:0000038.control_mean
64.7952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004143.1321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
50.5362From_analysisRNASeq.briggsae.WBls:0000041.control_mean
51.9945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
52.6689From_analysisRNASeq.briggsae.WBls:0000041.control_median
53.3434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
53.6749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
36.7689From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
42.1422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
46.8427From_analysisRNASeq.briggsae.WBls:0000041.control_mean
47.5633From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
26.0178From_analysisRNASeq.briggsae.WBls:0000063.control_mean
29.1155From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
32.4118From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
33.497From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
35.0649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
28.7879From_analysisRNASeq.briggsae.WBls:0000063.control_mean
32.9544From_analysisRNASeq.briggsae.WBls:0000063.control_median
42.6381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010129.7914From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
32.4118From_analysisRNASeq.briggsae.total_over_all_stages.control_median
30.0318From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
32.3736From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00140072
00140073
00140074
00140075
00140076
00140077
Ortholog (34)
ParalogWBGene00033831Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035321Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037827Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; ATP hydrolysis activity; and peptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Is an ortholog of C. elegans Y47C4A.1 and ppgn-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG16820
Corresponding_CDS_historyCBG16820:bp194
CBG16820:bp255
Corresponding_transcriptCBG16820.1
Other_sequence (57)
Experimental_infoExpr_patternExpr1060411
Microarray_resultsGPL8303_CB6_WBGene00036653_A
GPL8303_CB6_WBGene00036653_B
GPL8303_CB6_WBGene00036653_C
GPL14143_CBG16820_1764-1823_0.754_78_B
GPL14143_CBG16820_1878-1937_0.777_40_C
GPL14143_CBG16820_1966-2025_0.752_83_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
Remark[191127 pad] The CGC name Cbr-ppgn-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene