WormBase Tree Display for Gene: WBGene00039380

WBGene00039380 SMap: S_parent: Sequence: cb25.fpc4180
  Identity: Version: 2
    Name: CGC_name: Cbr-casc-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20393
      Molecular_name: CBG20393
        CBG20393.1
        CBP25930
      Other_name: CBG_20393 Accession_evidence: NDB HE601396
      Public_name: Cbr-casc-3
    DB_info: Database: NDB locus_tag CBG_20393
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 04 Jun 2020 14:38:21 WBPerson1983 Name_change: CGC_name: Cbr-casc-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: casc
    Allele: WBVar00128611
      WBVar00139264
      WBVar00128605
      WBVar00128612
      WBVar00128606
      WBVar00128613
      WBVar00128601
      WBVar00128607
      WBVar00128608
      WBVar00128602
      WBVar00049949
      WBVar00128609
      WBVar00128603
      WBVar00128604
      WBVar00128610
    RNASeq_FPKM: WBls:0000002 33.7212 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        39.561 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        53.691 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        7.91168 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        17.5694 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        28.5652 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        29.6833 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 149.621 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        152.243 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        154.866 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        109.252 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        137.913 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 92.8769 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        92.9603 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        93.0437 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        100.771 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        104.44 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        97.8146 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        97.9415 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 21.9545 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        27.0632 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        30.1843 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        38.1656 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        50.7622 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        54.5967 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        55.1172 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        59.4723 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        69.9869 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        17.927 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        21.7827 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        33.9778 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 25.9788 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        26.2835 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        43.4887 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        9.38313 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        31.7895 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        34.7337 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        48.3074 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 66.004 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 19.7314 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        26.634 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        44.2856 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        45.4579 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        64.2817 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        66.4954 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 14.1193 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        15.3437 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        15.6021 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        15.8335 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        15.8605 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        18.0103 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        14.0947 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        16.4364 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        21.19 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 15.1131 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        15.9128 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        16.8103 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        19.1581 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        19.4136 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        28.5405 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        18.1119 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        20.171 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        25.236 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 28.5405 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        44.52 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        33.3531 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        48.1548 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00142870
      00142871
      00142872
    Ortholog: WBGene00012343 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00056045 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00144119 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00134064 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g9805 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g2560 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13274 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22798 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g4500 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11553 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9705 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22249 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-W08E3.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g17854 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00782.g15419 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_20334 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001707 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_10279300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2710 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00097947 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA processing. Predicted to be part of exon-exon junction complex. Is an ortholog of C. elegans casc-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20393
    Corresponding_CDS_history: CBG20393:bp194
    Corresponding_transcript: CBG20393.1
    Other_sequence: HCC02435_1
      MJ04315
      JI216801.1
      EX013927.1
      HC00521
      MH00890
      Acan_contig15306
      FK807904.1
      MA03105
      ACC03871_1
      EX012149.1
      TCC01975_1
      Dviv_isotig32259
      MJ04321
      JI472490.1
      HBC05962_1
      TX01455
      GO239704.1
      MAC00881_1
      Hbac_isotig01113
      XI02764
      PT03591
      MA01575
      MJ04345
      MHC02568_1
      ES408634.1
      JI169520.1
  Experimental_info: Expr_pattern: Expr1064867
    Microarray_results: GPL8303_CB6_WBGene00039380_A
      GPL8303_CB6_WBGene00039380_B
      GPL14143_CBG20393_293-352_0.824_49_A
      GPL14143_CBG20393_1232-1291_0.759_120_B
      GPL14143_CBG20393_1828-1887_0.880_19_C
  Method: Gene