WormBase Tree Display for Gene: WBGene00040054

WBGene00040054 SMap: S_parent: Sequence: cb25.fpc4224b
  Identity: Version: 2
    Name: CGC_name: Cbr-exo-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21211
      Molecular_name: CBG21211
        CBG21211.1
        CBP35329
      Other_name: CBG_21211 Accession_evidence: NDB HE600921
      Public_name: Cbr-exo-1
    DB_info: Database: NDB locus_tag CBG_21211
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 23 Mar 2009 11:08:25 WBPerson9133 Name_change: CGC_name: Cbr-exo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: exo
    Allele: WBVar00000678
    RNASeq_FPKM: WBls:0000002 5.68119 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        6.93676 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        6.9584 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        8.1707 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        7.06137 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.19679 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        7.43518 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 26.0925 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        27.7453 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        29.398 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        31.2199 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        38.1693 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 13.0947 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        13.9014 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        14.708 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        12.9751 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        13.384 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        14.4444 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        9.24432 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.284131 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.743207 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1.49887 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.46926 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        1.47003 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        1.67336 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.19685 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 1.14758 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 2.2666 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.6261 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        3.29886 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        3.42799 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        3.97161 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        4.84764 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 18.5603 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        26.8855 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        28.3235 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        29.0961 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        29.8686 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        30.7894 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        21.9832 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        22.1795 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        25.2515 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        25.2841 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 11.6756 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        11.7945 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        11.852 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        12.1402 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        12.47 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        12.9088 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        12.161 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        12.3092 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        13.1546 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 10.5497 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        6.9584 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        10.46 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        11.793 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00143564
      00143565
      00143566
    Ortholog (34)
    Paralog: WBGene00033574 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035319 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037095 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity and nuclease activity. Is an ortholog of C. elegans exo-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21211
    Corresponding_CDS_history: CBG21211:bp194
    Corresponding_transcript: CBG21211.1
    Other_sequence (14)
  Experimental_info: Expr_pattern: Expr1058865
    Microarray_results: GPL8303_CB6_WBGene00040054_A
      GPL8303_CB6_WBGene00040054_B
      GPL8303_CB6_WBGene00040054_C
      GPL14143_CBG21211_402-461_0.787_106_C
      GPL14143_CBG21211_756-815_0.843_54_B
      GPL14143_CBG21211_877-936_0.870_31_A
  Method: Gene