WormBase Tree Display for Gene: WBGene00041443

WBGene00041443 SMap: S_parent: Sequence: cb25.fpc4426b
  Identity: Version: 3
    Name: CGC_name: Cbr-lron-12 From_analysis: Inferred_from_orthology
      Sequence_name: CBG23009
      Molecular_name: CBG23009
        CBG23009.1
        CBP42230
      Other_name: CBG_23009 Accession_evidence: NDB HE600964
      Public_name: Cbr-lron-12
    DB_info: Database: NDB locus_tag CBG_23009
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:11 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 09 Dec 2011 15:52:14 WBPerson2970 Name_change: CGC_name: Cbr-lron-12
        3 31 Aug 2016 10:30:13 WBPerson4025 Event: Split_into: WBGene00270540
      Split_into: WBGene00270540
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lron
    RNASeq_FPKM: WBls:0000002 1.5385 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        3.44178 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        4.14992 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        4.63692 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        3.45483 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        3.494 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        3.82196 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0.856278 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        1.7068 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        2.55732 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        2.14003 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        3.0065 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 14.1065 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        14.2812 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        14.456 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        10.0011 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        12.0095 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        13.7966 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        18.4099 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.60118 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        2.49463 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        3.85497 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.4691 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        5.06544 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        5.48186 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        8.69687 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 3.44396 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 1.51759 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.11538 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        2.2154 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        2.31542 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        2.55299 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        4.26356 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 0.37993 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.485387 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.718022 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.950656 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        1.11913 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.66055 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        1.60632 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.61933 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.26198 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        2.97748 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.390248 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.959848 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.00762 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.07084 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.16664 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.45054 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        1.11796 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.11874 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1.66967 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 2.19117 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.47605 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.52597 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        4.29822 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (27)
    Paralog: WBGene00026853 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029567 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029681 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032222 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033740 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041445 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: BspA type Leucine rich repeat region; Leucine-rich repeat; Leucine-rich repeat domain superfamily; BspA type Leucine rich repeat region (6 copies); and Leucine rich repeat. Is an ortholog of C. elegans lron-12. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG23009
    Corresponding_CDS_history: CBG23009:bp255
    Corresponding_transcript: CBG23009.1
    Other_sequence: Oden_isotig21048
      Acan_isotig10454
      JI480715.1
  Experimental_info: Microarray_results: GPL14143_CBG23009_816-875_0.908_17_B
  Method: Gene